Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 AC067750.1-201ENST00000608826 6545 ntBASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 AC002310.6-201ENST00000624451 1377 ntBASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 AC104581.4-201ENST00000623126 3052 ntBASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 ARMC10P1-201ENST00000313754 855 ntBASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 AL122018.1-201ENST00000446607 2310 ntBASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 AC010491.1-201ENST00000563101 2797 ntBASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHMP1AQ9HD42 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 TNRC18P2-201ENST00000417666 2714 ntBASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 AC006449.6-201ENST00000612330 2296 ntBASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 AL031731.1-201ENST00000642131 2094 ntBASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 PC-214ENST00000628663 1470 ntTSL 5 BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 KRT8P39-201ENST00000396270 1433 ntBASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.02□□□□□ -0.16
CHMP1AQ9HD42 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms