Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 AC061975.2-201ENST00000581722 295 ntBASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 AC003101.2-201ENST00000612557 442 ntBASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 REXO1L8P-201ENST00000604378 1897 ntBASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 AC092850.2-201ENST00000623821 2697 ntBASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 AL353705.2-201ENST00000428243 662 ntBASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 AC051619.7-201ENST00000568314 623 ntBASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM39Q9HCM9 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM39Q9HCM9 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
TRIM39Q9HCM9 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM39Q9HCM9 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM39Q9HCM9 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
TRIM39Q9HCM9 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.08■□□□□ 0.17
TRIM39Q9HCM9 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM39Q9HCM9 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM39Q9HCM9 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.17
TRIM39Q9HCM9 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.08■□□□□ 0.17
TRIM39Q9HCM9 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms