Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 SAPCD2P2-201ENST00000431719 1174 ntBASIC15.32■□□□□ 0.04
NR1H4Q96RI1 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 AL512604.3-201ENST00000569583 964 ntBASIC15.32■□□□□ 0.04
NR1H4Q96RI1 GPX4-207ENST00000589115 812 ntTSL 2 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 AC092865.7-201ENST00000641832 219 ntBASIC15.32■□□□□ 0.04
NR1H4Q96RI1 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.32■□□□□ 0.04
NR1H4Q96RI1 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 AC090616.6-203ENST00000579186 1945 ntBASIC15.31■□□□□ 0.04
NR1H4Q96RI1 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 CRAT-202ENST00000393384 973 ntTSL 2 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 HMGA1P5-201ENST00000412453 271 ntBASIC15.31■□□□□ 0.04
NR1H4Q96RI1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 MTCL1P1-201ENST00000446207 792 ntBASIC15.31■□□□□ 0.04
NR1H4Q96RI1 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 CLN6-221ENST00000637494 765 ntTSL 5 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 CICP20-201ENST00000443330 2801 ntBASIC15.31■□□□□ 0.04
NR1H4Q96RI1 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NR1H4Q96RI1 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.3■□□□□ 0.04
NR1H4Q96RI1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms