Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 AC106886.1-201ENST00000568660 600 ntBASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 NAA38-206ENST00000576384 424 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 AL691432.1-201ENST00000596308 1422 ntBASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 BNIP3P1-202ENST00000550043 1585 ntBASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 CYP4F24P-201ENST00000586049 1580 ntBASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 AC008741.2-201ENST00000612792 3115 ntBASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 AC007541.1-201ENST00000570282 1469 ntBASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 MTND6P24-201ENST00000440466 518 ntBASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 AC011495.1-201ENST00000498085 584 ntBASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
NKX2-3Q8TAU0 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 MPI-209ENST00000564003 1195 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 ARL16-202ENST00000570561 768 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 AL132655.2-201ENST00000596276 594 ntBASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX2-3Q8TAU0 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 AC112504.1-201ENST00000623415 1841 ntBASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.02■□□□□ 0.64
NKX2-3Q8TAU0 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms