Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 RPS2P1-201ENST00000434010 821 ntBASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 AC148477.8-201ENST00000624298 468 ntBASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 FAM215A-202ENST00000632077 792 ntBASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 AL031731.1-201ENST00000642131 2094 ntBASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 LINC01144-201ENST00000626198 1710 ntBASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
DEPDC4Q8N2C3 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 AL512652.2-201ENST00000625156 1716 ntBASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 AC112504.1-201ENST00000623415 1841 ntBASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 PRYP5-201ENST00000451909 266 ntBASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 TERC-201ENST00000602385 541 ntBASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 MIR1199-201ENST00000621445 119 ntBASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 AC243591.1-201ENST00000452967 1364 ntBASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
DEPDC4Q8N2C3 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
DEPDC4Q8N2C3 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
DEPDC4Q8N2C3 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
DEPDC4Q8N2C3 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
DEPDC4Q8N2C3 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms