Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.32□□□□□ -0.28
CDX1P47902 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CDX1P47902 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC13.32□□□□□ -0.28
CDX1P47902 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 AC016396.2-201ENST00000562575 1417 ntBASIC13.32□□□□□ -0.28
CDX1P47902 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CDX1P47902 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.32□□□□□ -0.28
CDX1P47902 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 AC126755.1-201ENST00000525846 6405 ntBASIC13.32□□□□□ -0.28
CDX1P47902 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
CDX1P47902 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
CDX1P47902 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 CD63-210ENST00000550776 870 ntTSL 5 BASIC13.32□□□□□ -0.28
CDX1P47902 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC13.32□□□□□ -0.28
CDX1P47902 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.32□□□□□ -0.28
CDX1P47902 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC13.32□□□□□ -0.28
CDX1P47902 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.32□□□□□ -0.28
CDX1P47902 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CDX1P47902 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CDX1P47902 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CDX1P47902 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
CDX1P47902 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
CDX1P47902 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CDX1P47902 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.31□□□□□ -0.28
CDX1P47902 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC13.31□□□□□ -0.28
CDX1P47902 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 KRT18P13-201ENST00000400056 1290 ntBASIC13.31□□□□□ -0.28
CDX1P47902 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.31□□□□□ -0.28
CDX1P47902 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC13.31□□□□□ -0.28
CDX1P47902 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC13.31□□□□□ -0.28
CDX1P47902 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.31□□□□□ -0.28
CDX1P47902 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CDX1P47902 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms