Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.62■□□□□ 0.57
COL2A1P02458 BRF1-202ENST00000379932 884 ntTSL 5 BASIC18.62■□□□□ 0.57
COL2A1P02458 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 AP001889.1-201ENST00000525414 633 ntBASIC18.62■□□□□ 0.57
COL2A1P02458 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC18.62■□□□□ 0.57
COL2A1P02458 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.62■□□□□ 0.57
COL2A1P02458 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL2A1P02458 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC18.62■□□□□ 0.57
COL2A1P02458 AC107373.2-201ENST00000607735 490 ntBASIC18.62■□□□□ 0.57
COL2A1P02458 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.62■□□□□ 0.57
COL2A1P02458 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 TP73-213ENST00000604479 1623 ntTSL 5 BASIC18.62■□□□□ 0.57
COL2A1P02458 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL2A1P02458 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL2A1P02458 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.61■□□□□ 0.57
COL2A1P02458 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
COL2A1P02458 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL2A1P02458 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
COL2A1P02458 MFF-223ENST00000524634 647 ntTSL 2 BASIC18.61■□□□□ 0.57
COL2A1P02458 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 AC009486.1-201ENST00000569860 813 ntBASIC18.61■□□□□ 0.57
COL2A1P02458 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.61■□□□□ 0.57
COL2A1P02458 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.61■□□□□ 0.57
COL2A1P02458 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.61■□□□□ 0.57
COL2A1P02458 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.61■□□□□ 0.57
COL2A1P02458 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL2A1P02458 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 AC011676.5-201ENST00000624864 2660 ntBASIC18.61■□□□□ 0.57
COL2A1P02458 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
COL2A1P02458 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.61■□□□□ 0.57
COL2A1P02458 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL2A1P02458 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC18.6■□□□□ 0.57
COL2A1P02458 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.6■□□□□ 0.57
COL2A1P02458 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
COL2A1P02458 MPV17-206ENST00000402722 827 ntTSL 3 BASIC18.6■□□□□ 0.57
COL2A1P02458 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.6■□□□□ 0.57
COL2A1P02458 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.6■□□□□ 0.57
COL2A1P02458 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.6■□□□□ 0.57
COL2A1P02458 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC18.6■□□□□ 0.57
COL2A1P02458 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
COL2A1P02458 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 AP001063.1-201ENST00000568332 529 ntBASIC18.6■□□□□ 0.57
COL2A1P02458 GNRHR2-203ENST00000581100 1187 ntBASIC18.6■□□□□ 0.57
COL2A1P02458 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC18.6■□□□□ 0.57
COL2A1P02458 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.6■□□□□ 0.57
COL2A1P02458 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC18.6■□□□□ 0.57
COL2A1P02458 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
COL2A1P02458 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.6■□□□□ 0.57
COL2A1P02458 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
COL2A1P02458 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.6■□□□□ 0.57
COL2A1P02458 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.6■□□□□ 0.57
COL2A1P02458 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
COL2A1P02458 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.6■□□□□ 0.57
COL2A1P02458 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL2A1P02458 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
COL2A1P02458 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL2A1P02458 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL2A1P02458 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.59■□□□□ 0.57
COL2A1P02458 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.59■□□□□ 0.57
COL2A1P02458 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.59■□□□□ 0.57
COL2A1P02458 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL2A1P02458 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL2A1P02458 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL2A1P02458 USB1-202ENST00000423271 1217 ntTSL 2 BASIC18.59■□□□□ 0.57
COL2A1P02458 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.59■□□□□ 0.57
COL2A1P02458 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.59■□□□□ 0.57
COL2A1P02458 AC022137.2-201ENST00000503482 481 ntBASIC18.59■□□□□ 0.57
COL2A1P02458 GAPDHP40-201ENST00000505218 1006 ntBASIC18.59■□□□□ 0.57
COL2A1P02458 AP000812.2-201ENST00000538934 718 ntBASIC18.59■□□□□ 0.57
COL2A1P02458 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC18.59■□□□□ 0.57
COL2A1P02458 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.59■□□□□ 0.57
COL2A1P02458 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms