Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.62■■□□□ 1.05
SPENQ96T58 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SPENQ96T58 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.62■■□□□ 1.05
SPENQ96T58 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.62■■□□□ 1.05
SPENQ96T58 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SPENQ96T58 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.61■■□□□ 1.05
SPENQ96T58 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.61■■□□□ 1.05
SPENQ96T58 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.61■■□□□ 1.05
SPENQ96T58 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SPENQ96T58 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SPENQ96T58 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SPENQ96T58 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SPENQ96T58 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SPENQ96T58 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
SPENQ96T58 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
SPENQ96T58 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.61■■□□□ 1.05
SPENQ96T58 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SPENQ96T58 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SPENQ96T58 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.6■■□□□ 1.05
SPENQ96T58 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SPENQ96T58 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SPENQ96T58 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SPENQ96T58 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SPENQ96T58 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SPENQ96T58 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
SPENQ96T58 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SPENQ96T58 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.59■■□□□ 1.05
SPENQ96T58 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SPENQ96T58 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
SPENQ96T58 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SPENQ96T58 MIR6724-1-201ENST00000616420 92 ntBASIC21.58■■□□□ 1.05
SPENQ96T58 MIR6724-2-201ENST00000616483 92 ntBASIC21.58■■□□□ 1.05
SPENQ96T58 MIR6724-4-201ENST00000617390 92 ntBASIC21.58■■□□□ 1.05
SPENQ96T58 MIR6724-3-201ENST00000622482 92 ntBASIC21.58■■□□□ 1.05
SPENQ96T58 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.58■■□□□ 1.05
SPENQ96T58 AC010997.5-201ENST00000609182 354 ntBASIC21.58■■□□□ 1.05
SPENQ96T58 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SPENQ96T58 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.58■■□□□ 1.04
SPENQ96T58 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.58■■□□□ 1.04
SPENQ96T58 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SPENQ96T58 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SPENQ96T58 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SPENQ96T58 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SPENQ96T58 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.57■■□□□ 1.04
SPENQ96T58 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.57■■□□□ 1.04
SPENQ96T58 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.57■■□□□ 1.04
SPENQ96T58 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SPENQ96T58 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SPENQ96T58 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SPENQ96T58 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.56■■□□□ 1.04
SPENQ96T58 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.56■■□□□ 1.04
SPENQ96T58 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SPENQ96T58 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.55■■□□□ 1.04
SPENQ96T58 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.55■■□□□ 1.04
SPENQ96T58 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SPENQ96T58 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SPENQ96T58 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SPENQ96T58 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.55■■□□□ 1.04
SPENQ96T58 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SPENQ96T58 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
SPENQ96T58 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.54■■□□□ 1.04
SPENQ96T58 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SPENQ96T58 MIR5787-201ENST00000611784 55 ntBASIC21.54■■□□□ 1.04
SPENQ96T58 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SPENQ96T58 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.54■■□□□ 1.04
SPENQ96T58 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.53■■□□□ 1.04
SPENQ96T58 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SPENQ96T58 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.53■■□□□ 1.04
SPENQ96T58 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.53■■□□□ 1.04
SPENQ96T58 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.53■■□□□ 1.04
SPENQ96T58 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.53■■□□□ 1.04
SPENQ96T58 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.53■■□□□ 1.04
SPENQ96T58 MTDHP2-201ENST00000601468 714 ntBASIC21.53■■□□□ 1.04
SPENQ96T58 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SPENQ96T58 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SPENQ96T58 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.52■■□□□ 1.04
SPENQ96T58 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SPENQ96T58 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SPENQ96T58 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SPENQ96T58 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.52■■□□□ 1.04
SPENQ96T58 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
SPENQ96T58 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SPENQ96T58 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SPENQ96T58 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SPENQ96T58 AC104564.3-201ENST00000582367 638 ntBASIC21.51■■□□□ 1.03
SPENQ96T58 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.51■■□□□ 1.03
SPENQ96T58 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SPENQ96T58 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.51■■□□□ 1.03
SPENQ96T58 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.51■■□□□ 1.03
SPENQ96T58 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SPENQ96T58 MIR6821-201ENST00000617625 74 ntBASIC21.5■■□□□ 1.03
SPENQ96T58 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SPENQ96T58 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SPENQ96T58 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SPENQ96T58 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
SPENQ96T58 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.5■■□□□ 1.03
SPENQ96T58 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SPENQ96T58 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SPENQ96T58 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SPENQ96T58 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 9.4 ms