Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
USHBP1Q8N6Y0 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
USHBP1Q8N6Y0 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
USHBP1Q8N6Y0 LSM4-201ENST00000252816 986 ntTSL 2 BASIC31.52■■■□□ 2.64
USHBP1Q8N6Y0 RPP21-222ENST00000433076 577 ntTSL 2 BASIC31.52■■■□□ 2.64
USHBP1Q8N6Y0 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC31.52■■■□□ 2.64
USHBP1Q8N6Y0 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
USHBP1Q8N6Y0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
USHBP1Q8N6Y0 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
USHBP1Q8N6Y0 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
USHBP1Q8N6Y0 MIR935-201ENST00000401179 91 ntBASIC31.51■■■□□ 2.63
USHBP1Q8N6Y0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC31.51■■■□□ 2.63
USHBP1Q8N6Y0 AC011551.1-201ENST00000614101 683 ntBASIC31.51■■■□□ 2.63
USHBP1Q8N6Y0 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
USHBP1Q8N6Y0 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
USHBP1Q8N6Y0 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
USHBP1Q8N6Y0 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC31.5■■■□□ 2.63
USHBP1Q8N6Y0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC31.5■■■□□ 2.63
USHBP1Q8N6Y0 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC31.5■■■□□ 2.63
USHBP1Q8N6Y0 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
USHBP1Q8N6Y0 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
USHBP1Q8N6Y0 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC31.49■■■□□ 2.63
USHBP1Q8N6Y0 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
USHBP1Q8N6Y0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC31.49■■■□□ 2.63
USHBP1Q8N6Y0 MIR638-201ENST00000385237 100 ntBASIC31.49■■■□□ 2.63
USHBP1Q8N6Y0 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
USHBP1Q8N6Y0 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
USHBP1Q8N6Y0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC31.49■■■□□ 2.63
USHBP1Q8N6Y0 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
USHBP1Q8N6Y0 MTDHP2-201ENST00000601468 714 ntBASIC31.48■■■□□ 2.63
USHBP1Q8N6Y0 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC31.47■■■□□ 2.63
USHBP1Q8N6Y0 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC31.47■■■□□ 2.63
USHBP1Q8N6Y0 AF131216.4-201ENST00000638924 1588 ntBASIC31.47■■■□□ 2.63
USHBP1Q8N6Y0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC31.47■■■□□ 2.63
USHBP1Q8N6Y0 AL136116.3-201ENST00000402907 1138 ntBASIC31.46■■■□□ 2.63
USHBP1Q8N6Y0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
USHBP1Q8N6Y0 TK2-202ENST00000417693 1046 ntTSL 2 BASIC31.46■■■□□ 2.63
USHBP1Q8N6Y0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC31.46■■■□□ 2.63
USHBP1Q8N6Y0 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC31.46■■■□□ 2.63
USHBP1Q8N6Y0 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
USHBP1Q8N6Y0 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC31.44■■■□□ 2.62
USHBP1Q8N6Y0 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
USHBP1Q8N6Y0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
USHBP1Q8N6Y0 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC31.44■■■□□ 2.62
USHBP1Q8N6Y0 NALT1-201ENST00000429224 738 ntTSL 5 BASIC31.44■■■□□ 2.62
USHBP1Q8N6Y0 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
USHBP1Q8N6Y0 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC31.44■■■□□ 2.62
USHBP1Q8N6Y0 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC31.44■■■□□ 2.62
USHBP1Q8N6Y0 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 MIR3621-201ENST00000580529 85 ntBASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 MIR6724-1-201ENST00000616420 92 ntBASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 MIR6724-2-201ENST00000616483 92 ntBASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 MIR6724-4-201ENST00000617390 92 ntBASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 MIR6724-3-201ENST00000622482 92 ntBASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 FOXO3B-201ENST00000395675 1928 ntBASIC31.43■■■□□ 2.62
USHBP1Q8N6Y0 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC31.42■■■□□ 2.62
USHBP1Q8N6Y0 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
USHBP1Q8N6Y0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC31.42■■■□□ 2.62
USHBP1Q8N6Y0 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC31.42■■■□□ 2.62
USHBP1Q8N6Y0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC31.42■■■□□ 2.62
USHBP1Q8N6Y0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC31.42■■■□□ 2.62
USHBP1Q8N6Y0 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
USHBP1Q8N6Y0 RALB-208ENST00000631312 311 ntTSL 5 BASIC31.42■■■□□ 2.62
USHBP1Q8N6Y0 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC31.42■■■□□ 2.62
USHBP1Q8N6Y0 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
USHBP1Q8N6Y0 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.41■■■□□ 2.62
USHBP1Q8N6Y0 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
USHBP1Q8N6Y0 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
USHBP1Q8N6Y0 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
USHBP1Q8N6Y0 ERN1-208ENST00000606895 2068 ntBASIC31.41■■■□□ 2.62
USHBP1Q8N6Y0 MIR4466-201ENST00000606121 54 ntBASIC31.41■■■□□ 2.62
USHBP1Q8N6Y0 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
USHBP1Q8N6Y0 PKM-203ENST00000389093 2279 ntTSL 5 BASIC31.41■■■□□ 2.62
USHBP1Q8N6Y0 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC31.4■■■□□ 2.62
USHBP1Q8N6Y0 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
USHBP1Q8N6Y0 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
USHBP1Q8N6Y0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
USHBP1Q8N6Y0 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
USHBP1Q8N6Y0 AL139246.5-201ENST00000606645 996 ntBASIC31.39■■■□□ 2.62
USHBP1Q8N6Y0 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.61
USHBP1Q8N6Y0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
USHBP1Q8N6Y0 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
USHBP1Q8N6Y0 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
USHBP1Q8N6Y0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC31.38■■■□□ 2.61
USHBP1Q8N6Y0 QDPR-206ENST00000508623 601 ntTSL 3 BASIC31.37■■■□□ 2.61
USHBP1Q8N6Y0 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
USHBP1Q8N6Y0 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
USHBP1Q8N6Y0 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
USHBP1Q8N6Y0 AC096887.2-201ENST00000623443 1957 ntBASIC31.36■■■□□ 2.61
USHBP1Q8N6Y0 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
USHBP1Q8N6Y0 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
USHBP1Q8N6Y0 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC31.36■■■□□ 2.61
USHBP1Q8N6Y0 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC31.36■■■□□ 2.61
USHBP1Q8N6Y0 EXOG-217ENST00000630638 197 ntTSL 5 BASIC31.36■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms