Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
COL4A1P02462 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
COL4A1P02462 AL117332.1-201ENST00000622628 974 ntBASIC29.38■■■□□ 2.29
COL4A1P02462 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC29.38■■■□□ 2.29
COL4A1P02462 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
COL4A1P02462 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC29.37■■■□□ 2.29
COL4A1P02462 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC29.37■■■□□ 2.29
COL4A1P02462 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL4A1P02462 PEMT-206ENST00000435340 960 ntTSL 5 BASIC29.37■■■□□ 2.29
COL4A1P02462 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC29.36■■■□□ 2.29
COL4A1P02462 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
COL4A1P02462 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL4A1P02462 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
COL4A1P02462 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC29.36■■■□□ 2.29
COL4A1P02462 QDPR-206ENST00000508623 601 ntTSL 3 BASIC29.36■■■□□ 2.29
COL4A1P02462 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL4A1P02462 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL4A1P02462 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC29.35■■■□□ 2.29
COL4A1P02462 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC29.35■■■□□ 2.29
COL4A1P02462 GAK-223ENST00000628912 497 ntTSL 5 BASIC29.35■■■□□ 2.29
COL4A1P02462 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL4A1P02462 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL4A1P02462 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL4A1P02462 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL4A1P02462 LSM4-201ENST00000252816 986 ntTSL 2 BASIC29.34■■■□□ 2.29
COL4A1P02462 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC29.34■■■□□ 2.29
COL4A1P02462 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC29.34■■■□□ 2.29
COL4A1P02462 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL4A1P02462 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL4A1P02462 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
COL4A1P02462 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
COL4A1P02462 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL4A1P02462 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC29.32■■■□□ 2.28
COL4A1P02462 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC29.31■■■□□ 2.28
COL4A1P02462 MIR638-201ENST00000385237 100 ntBASIC29.31■■■□□ 2.28
COL4A1P02462 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
COL4A1P02462 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
COL4A1P02462 RASSF1-AS1-201ENST00000629828 790 ntBASIC29.31■■■□□ 2.28
COL4A1P02462 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC29.31■■■□□ 2.28
COL4A1P02462 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC29.31■■■□□ 2.28
COL4A1P02462 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC29.31■■■□□ 2.28
COL4A1P02462 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC29.31■■■□□ 2.28
COL4A1P02462 AL512631.2-201ENST00000604634 923 ntBASIC29.31■■■□□ 2.28
COL4A1P02462 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL4A1P02462 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL4A1P02462 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
COL4A1P02462 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC29.3■■■□□ 2.28
COL4A1P02462 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC29.3■■■□□ 2.28
COL4A1P02462 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL4A1P02462 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL4A1P02462 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
COL4A1P02462 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC29.3■■■□□ 2.28
COL4A1P02462 MIR4466-201ENST00000606121 54 ntBASIC29.3■■■□□ 2.28
COL4A1P02462 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
COL4A1P02462 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC29.3■■■□□ 2.28
COL4A1P02462 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL4A1P02462 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL4A1P02462 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC29.29■■■□□ 2.28
COL4A1P02462 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC29.29■■■□□ 2.28
COL4A1P02462 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
COL4A1P02462 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL4A1P02462 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC29.29■■■□□ 2.28
COL4A1P02462 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
COL4A1P02462 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL4A1P02462 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
COL4A1P02462 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
COL4A1P02462 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC29.28■■■□□ 2.28
COL4A1P02462 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC29.28■■■□□ 2.28
COL4A1P02462 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL4A1P02462 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
COL4A1P02462 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL4A1P02462 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
COL4A1P02462 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
COL4A1P02462 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
COL4A1P02462 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL4A1P02462 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
COL4A1P02462 SRR-208ENST00000576848 588 ntTSL 4 BASIC29.26■■■□□ 2.27
COL4A1P02462 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
COL4A1P02462 FOXO3B-201ENST00000395675 1928 ntBASIC29.26■■■□□ 2.27
COL4A1P02462 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL4A1P02462 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL4A1P02462 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
COL4A1P02462 RPP21-222ENST00000433076 577 ntTSL 2 BASIC29.25■■■□□ 2.27
COL4A1P02462 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL4A1P02462 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL4A1P02462 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL4A1P02462 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC29.24■■■□□ 2.27
COL4A1P02462 AC010997.5-201ENST00000609182 354 ntBASIC29.24■■■□□ 2.27
COL4A1P02462 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
COL4A1P02462 MTDHP2-201ENST00000601468 714 ntBASIC29.23■■■□□ 2.27
COL4A1P02462 AC110285.6-201ENST00000617652 491 ntBASIC29.23■■■□□ 2.27
COL4A1P02462 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
COL4A1P02462 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL4A1P02462 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL4A1P02462 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC29.22■■■□□ 2.27
COL4A1P02462 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL4A1P02462 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
COL4A1P02462 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
COL4A1P02462 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC29.22■■■□□ 2.27
COL4A1P02462 MIR3621-201ENST00000580529 85 ntBASIC29.21■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms