Protein–RNA interactions for Protein: O95076

ALX3, Homeobox protein aristaless-like 3, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALX3O95076 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ALX3O95076 MIR3648-2-201ENST00000581792 180 ntBASIC20.69■□□□□ 0.9
ALX3O95076 MIR3648-1-201ENST00000615959 180 ntBASIC20.69■□□□□ 0.9
ALX3O95076 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
ALX3O95076 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ALX3O95076 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
ALX3O95076 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ALX3O95076 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ALX3O95076 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ALX3O95076 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ALX3O95076 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ALX3O95076 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ALX3O95076 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ALX3O95076 AC022211.4-201ENST00000625094 2161 ntBASIC20.68■□□□□ 0.9
ALX3O95076 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ALX3O95076 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.68■□□□□ 0.9
ALX3O95076 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ALX3O95076 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ALX3O95076 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ALX3O95076 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.67■□□□□ 0.9
ALX3O95076 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.67■□□□□ 0.9
ALX3O95076 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.67■□□□□ 0.9
ALX3O95076 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ALX3O95076 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ALX3O95076 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ALX3O95076 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.66■□□□□ 0.9
ALX3O95076 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.66■□□□□ 0.9
ALX3O95076 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ALX3O95076 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.66■□□□□ 0.9
ALX3O95076 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ALX3O95076 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ALX3O95076 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
ALX3O95076 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.66■□□□□ 0.9
ALX3O95076 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ALX3O95076 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
ALX3O95076 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
ALX3O95076 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ALX3O95076 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ALX3O95076 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ALX3O95076 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ALX3O95076 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.64■□□□□ 0.89
ALX3O95076 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.64■□□□□ 0.89
ALX3O95076 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.64■□□□□ 0.89
ALX3O95076 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ALX3O95076 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ALX3O95076 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ALX3O95076 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ALX3O95076 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
ALX3O95076 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ALX3O95076 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.63■□□□□ 0.89
ALX3O95076 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ALX3O95076 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ALX3O95076 SLC25A24-204ENST00000569674 2357 ntBASIC20.63■□□□□ 0.89
ALX3O95076 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.62■□□□□ 0.89
ALX3O95076 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.62■□□□□ 0.89
ALX3O95076 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ALX3O95076 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
ALX3O95076 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ALX3O95076 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.62■□□□□ 0.89
ALX3O95076 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ALX3O95076 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ALX3O95076 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ALX3O95076 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
ALX3O95076 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ALX3O95076 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ALX3O95076 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ALX3O95076 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ALX3O95076 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.61■□□□□ 0.89
ALX3O95076 AC097639.1-201ENST00000565519 1891 ntBASIC20.6■□□□□ 0.89
ALX3O95076 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALX3O95076 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALX3O95076 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALX3O95076 AC138932.3-201ENST00000567634 1902 ntBASIC20.6■□□□□ 0.89
ALX3O95076 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ALX3O95076 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
ALX3O95076 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALX3O95076 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALX3O95076 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALX3O95076 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ALX3O95076 AL139125.2-201ENST00000623134 1869 ntBASIC20.59■□□□□ 0.89
ALX3O95076 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.59■□□□□ 0.89
ALX3O95076 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.59■□□□□ 0.89
ALX3O95076 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALX3O95076 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALX3O95076 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ALX3O95076 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
ALX3O95076 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALX3O95076 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALX3O95076 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.58■□□□□ 0.89
ALX3O95076 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALX3O95076 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
ALX3O95076 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALX3O95076 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ALX3O95076 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ALX3O95076 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.58■□□□□ 0.89
ALX3O95076 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
ALX3O95076 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.58■□□□□ 0.89
ALX3O95076 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.58■□□□□ 0.88
ALX3O95076 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ALX3O95076 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms