Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.19■■□□□ 1.3
SDC3O75056 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
SDC3O75056 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.19■■□□□ 1.3
SDC3O75056 AC131281.2-201ENST00000520478 145 ntBASIC23.19■■□□□ 1.3
SDC3O75056 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.19■■□□□ 1.3
SDC3O75056 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
SDC3O75056 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SDC3O75056 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
SDC3O75056 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SDC3O75056 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.18■■□□□ 1.3
SDC3O75056 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SDC3O75056 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
SDC3O75056 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
SDC3O75056 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SDC3O75056 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.18■■□□□ 1.3
SDC3O75056 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.18■■□□□ 1.3
SDC3O75056 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.18■■□□□ 1.3
SDC3O75056 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SDC3O75056 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.18■■□□□ 1.3
SDC3O75056 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SDC3O75056 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SDC3O75056 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SDC3O75056 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
SDC3O75056 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
SDC3O75056 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.17■■□□□ 1.3
SDC3O75056 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.17■■□□□ 1.3
SDC3O75056 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SDC3O75056 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SDC3O75056 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SDC3O75056 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SDC3O75056 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SDC3O75056 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.16■■□□□ 1.3
SDC3O75056 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SDC3O75056 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.16■■□□□ 1.3
SDC3O75056 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
SDC3O75056 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.15■■□□□ 1.3
SDC3O75056 AL117332.1-201ENST00000622628 974 ntBASIC23.15■■□□□ 1.3
SDC3O75056 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SDC3O75056 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.15■■□□□ 1.3
SDC3O75056 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
SDC3O75056 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
SDC3O75056 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SDC3O75056 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC23.14■■□□□ 1.29
SDC3O75056 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.14■■□□□ 1.29
SDC3O75056 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SDC3O75056 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.14■■□□□ 1.29
SDC3O75056 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.14■■□□□ 1.29
SDC3O75056 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SDC3O75056 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.14■■□□□ 1.29
SDC3O75056 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
SDC3O75056 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SDC3O75056 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SDC3O75056 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SDC3O75056 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.13■■□□□ 1.29
SDC3O75056 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.13■■□□□ 1.29
SDC3O75056 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.13■■□□□ 1.29
SDC3O75056 MIR935-201ENST00000401179 91 ntBASIC23.13■■□□□ 1.29
SDC3O75056 AL136116.3-201ENST00000402907 1138 ntBASIC23.13■■□□□ 1.29
SDC3O75056 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.13■■□□□ 1.29
SDC3O75056 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
SDC3O75056 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SDC3O75056 FOXO3B-201ENST00000395675 1928 ntBASIC23.13■■□□□ 1.29
SDC3O75056 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SDC3O75056 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SDC3O75056 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SDC3O75056 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SDC3O75056 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
SDC3O75056 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SDC3O75056 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SDC3O75056 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.12■■□□□ 1.29
SDC3O75056 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
SDC3O75056 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
SDC3O75056 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
SDC3O75056 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SDC3O75056 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.11■■□□□ 1.29
SDC3O75056 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.11■■□□□ 1.29
SDC3O75056 MIR6724-1-201ENST00000616420 92 ntBASIC23.11■■□□□ 1.29
SDC3O75056 MIR6724-2-201ENST00000616483 92 ntBASIC23.11■■□□□ 1.29
SDC3O75056 MIR6724-4-201ENST00000617390 92 ntBASIC23.11■■□□□ 1.29
SDC3O75056 MIR6724-3-201ENST00000622482 92 ntBASIC23.11■■□□□ 1.29
SDC3O75056 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.11■■□□□ 1.29
SDC3O75056 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SDC3O75056 MIR638-201ENST00000385237 100 ntBASIC23.1■■□□□ 1.29
SDC3O75056 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SDC3O75056 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.1■■□□□ 1.29
SDC3O75056 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.1■■□□□ 1.29
SDC3O75056 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SDC3O75056 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.1■■□□□ 1.29
SDC3O75056 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SDC3O75056 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SDC3O75056 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SDC3O75056 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.09■■□□□ 1.29
SDC3O75056 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SDC3O75056 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
SDC3O75056 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.09■■□□□ 1.29
SDC3O75056 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC23.09■■□□□ 1.29
SDC3O75056 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.09■■□□□ 1.29
SDC3O75056 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC23.09■■□□□ 1.29
SDC3O75056 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
SDC3O75056 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms