Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.31■■□□□ 1.32
SNX3O60493 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SNX3O60493 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
SNX3O60493 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.3■■□□□ 1.32
SNX3O60493 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SNX3O60493 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23.3■■□□□ 1.32
SNX3O60493 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.3■■□□□ 1.32
SNX3O60493 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.29■■□□□ 1.32
SNX3O60493 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
SNX3O60493 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC23.29■■□□□ 1.32
SNX3O60493 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SNX3O60493 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.28■■□□□ 1.32
SNX3O60493 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
SNX3O60493 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SNX3O60493 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SNX3O60493 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.28■■□□□ 1.32
SNX3O60493 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SNX3O60493 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SNX3O60493 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC23.27■■□□□ 1.32
SNX3O60493 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SNX3O60493 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SNX3O60493 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.26■■□□□ 1.31
SNX3O60493 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC23.26■■□□□ 1.31
SNX3O60493 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.25■■□□□ 1.31
SNX3O60493 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
SNX3O60493 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SNX3O60493 LINC00565-201ENST00000562710 2331 ntBASIC23.25■■□□□ 1.31
SNX3O60493 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SNX3O60493 EP400NL-214ENST00000641289 2402 ntBASIC23.25■■□□□ 1.31
SNX3O60493 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.25■■□□□ 1.31
SNX3O60493 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.25■■□□□ 1.31
SNX3O60493 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
SNX3O60493 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SNX3O60493 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
SNX3O60493 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SNX3O60493 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SNX3O60493 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.24■■□□□ 1.31
SNX3O60493 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.24■■□□□ 1.31
SNX3O60493 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.23■■□□□ 1.31
SNX3O60493 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.23■■□□□ 1.31
SNX3O60493 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
SNX3O60493 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.23■■□□□ 1.31
SNX3O60493 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.23■■□□□ 1.31
SNX3O60493 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
SNX3O60493 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
SNX3O60493 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SNX3O60493 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SNX3O60493 HNRNPLP2-201ENST00000568980 1570 ntBASIC23.23■■□□□ 1.31
SNX3O60493 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
SNX3O60493 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
SNX3O60493 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.22■■□□□ 1.31
SNX3O60493 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
SNX3O60493 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SNX3O60493 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
SNX3O60493 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SNX3O60493 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
SNX3O60493 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SNX3O60493 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
SNX3O60493 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
SNX3O60493 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SNX3O60493 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.21■■□□□ 1.31
SNX3O60493 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SNX3O60493 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SNX3O60493 AC233723.2-201ENST00000623798 2106 ntBASIC23.21■■□□□ 1.31
SNX3O60493 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SNX3O60493 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SNX3O60493 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
SNX3O60493 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SNX3O60493 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SNX3O60493 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SNX3O60493 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.19■■□□□ 1.3
SNX3O60493 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.19■■□□□ 1.3
SNX3O60493 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.19■■□□□ 1.3
SNX3O60493 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
SNX3O60493 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SNX3O60493 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.19■■□□□ 1.3
SNX3O60493 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.18■■□□□ 1.3
SNX3O60493 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SNX3O60493 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.18■■□□□ 1.3
SNX3O60493 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SNX3O60493 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SNX3O60493 SUZ12P1-203ENST00000578195 985 ntBASIC23.18■■□□□ 1.3
SNX3O60493 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SNX3O60493 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
SNX3O60493 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SNX3O60493 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
SNX3O60493 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.17■■□□□ 1.3
SNX3O60493 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SNX3O60493 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SNX3O60493 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.17■■□□□ 1.3
SNX3O60493 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
SNX3O60493 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.17■■□□□ 1.3
SNX3O60493 AL359504.2-201ENST00000605506 1601 ntBASIC23.17■■□□□ 1.3
SNX3O60493 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SNX3O60493 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SNX3O60493 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SNX3O60493 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SNX3O60493 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.17■■□□□ 1.3
SNX3O60493 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
SNX3O60493 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 9.3 ms