Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDCBPO00560 SLC6A10P-202ENST00000431994 2058 ntBASIC19.96■□□□□ 0.79
SDCBPO00560 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDCBPO00560 AL157400.5-201ENST00000507624 621 ntBASIC19.96■□□□□ 0.79
SDCBPO00560 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SDCBPO00560 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SDCBPO00560 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SDCBPO00560 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.96■□□□□ 0.79
SDCBPO00560 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.95■□□□□ 0.78
SDCBPO00560 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDCBPO00560 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDCBPO00560 AC097639.1-201ENST00000565519 1891 ntBASIC19.95■□□□□ 0.78
SDCBPO00560 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDCBPO00560 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.95■□□□□ 0.78
SDCBPO00560 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.95■□□□□ 0.78
SDCBPO00560 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.95■□□□□ 0.78
SDCBPO00560 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.95■□□□□ 0.78
SDCBPO00560 AC022413.1-201ENST00000624602 984 ntBASIC19.95■□□□□ 0.78
SDCBPO00560 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.95■□□□□ 0.78
SDCBPO00560 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SDCBPO00560 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SDCBPO00560 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDCBPO00560 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDCBPO00560 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.94■□□□□ 0.78
SDCBPO00560 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.94■□□□□ 0.78
SDCBPO00560 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDCBPO00560 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDCBPO00560 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SDCBPO00560 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SDCBPO00560 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SDCBPO00560 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDCBPO00560 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDCBPO00560 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDCBPO00560 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDCBPO00560 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDCBPO00560 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.93■□□□□ 0.78
SDCBPO00560 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SDCBPO00560 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDCBPO00560 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDCBPO00560 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SDCBPO00560 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.92■□□□□ 0.78
SDCBPO00560 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDCBPO00560 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SDCBPO00560 MIR4449-201ENST00000578365 66 ntBASIC19.92■□□□□ 0.78
SDCBPO00560 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDCBPO00560 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SDCBPO00560 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDCBPO00560 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDCBPO00560 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.92■□□□□ 0.78
SDCBPO00560 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDCBPO00560 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDCBPO00560 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SDCBPO00560 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SDCBPO00560 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDCBPO00560 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.91■□□□□ 0.78
SDCBPO00560 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.91■□□□□ 0.78
SDCBPO00560 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.91■□□□□ 0.78
SDCBPO00560 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
SDCBPO00560 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SDCBPO00560 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDCBPO00560 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.9■□□□□ 0.78
SDCBPO00560 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDCBPO00560 AC092296.2-201ENST00000589470 999 ntBASIC19.9■□□□□ 0.78
SDCBPO00560 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDCBPO00560 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SDCBPO00560 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDCBPO00560 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDCBPO00560 SMPD5-203ENST00000639008 1464 ntBASIC19.9■□□□□ 0.78
SDCBPO00560 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SDCBPO00560 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDCBPO00560 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDCBPO00560 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDCBPO00560 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.89■□□□□ 0.77
SDCBPO00560 AC025884.2-201ENST00000553429 711 ntBASIC19.89■□□□□ 0.77
SDCBPO00560 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.89■□□□□ 0.77
SDCBPO00560 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SDCBPO00560 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SDCBPO00560 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SDCBPO00560 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 LINC00543-201ENST00000567234 1845 ntBASIC19.88■□□□□ 0.77
SDCBPO00560 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19.88■□□□□ 0.77
SDCBPO00560 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
SDCBPO00560 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.88■□□□□ 0.77
SDCBPO00560 MIR3960-201ENST00000583311 91 ntBASIC19.88■□□□□ 0.77
SDCBPO00560 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDCBPO00560 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC19.87■□□□□ 0.77
SDCBPO00560 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.87■□□□□ 0.77
SDCBPO00560 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SDCBPO00560 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SDCBPO00560 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms