Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.16■■□□□ 1.46
CBX4O00257 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC24.16■■□□□ 1.46
CBX4O00257 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CBX4O00257 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CBX4O00257 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CBX4O00257 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.15■■□□□ 1.46
CBX4O00257 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24.15■■□□□ 1.46
CBX4O00257 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.15■■□□□ 1.46
CBX4O00257 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC24.15■■□□□ 1.46
CBX4O00257 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CBX4O00257 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CBX4O00257 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CBX4O00257 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.46
CBX4O00257 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CBX4O00257 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CBX4O00257 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CBX4O00257 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.14■■□□□ 1.45
CBX4O00257 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CBX4O00257 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CBX4O00257 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC24.13■■□□□ 1.45
CBX4O00257 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CBX4O00257 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
CBX4O00257 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.13■■□□□ 1.45
CBX4O00257 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
CBX4O00257 CEBPA-AS1-201ENST00000592982 2198 ntBASIC24.12■■□□□ 1.45
CBX4O00257 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CBX4O00257 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CBX4O00257 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
CBX4O00257 AL031848.2-201ENST00000607670 837 ntBASIC24.12■■□□□ 1.45
CBX4O00257 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CBX4O00257 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CBX4O00257 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CBX4O00257 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CBX4O00257 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC24.12■■□□□ 1.45
CBX4O00257 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC24.12■■□□□ 1.45
CBX4O00257 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CBX4O00257 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CBX4O00257 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.11■■□□□ 1.45
CBX4O00257 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
CBX4O00257 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CBX4O00257 AC009299.2-201ENST00000482477 511 ntBASIC24.11■■□□□ 1.45
CBX4O00257 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
CBX4O00257 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
CBX4O00257 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CBX4O00257 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CBX4O00257 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.1■■□□□ 1.45
CBX4O00257 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CBX4O00257 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
CBX4O00257 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CBX4O00257 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CBX4O00257 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CBX4O00257 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CBX4O00257 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.09■■□□□ 1.45
CBX4O00257 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.09■■□□□ 1.45
CBX4O00257 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
CBX4O00257 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CBX4O00257 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CBX4O00257 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
CBX4O00257 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
CBX4O00257 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CBX4O00257 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
CBX4O00257 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
CBX4O00257 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CBX4O00257 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CBX4O00257 THA1P-201ENST00000590384 1145 ntBASIC24.07■■□□□ 1.44
CBX4O00257 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC24.07■■□□□ 1.44
CBX4O00257 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.06■■□□□ 1.44
CBX4O00257 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CBX4O00257 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC24.06■■□□□ 1.44
CBX4O00257 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC24.06■■□□□ 1.44
CBX4O00257 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CBX4O00257 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CBX4O00257 KRT18P24-201ENST00000344739 1156 ntBASIC24.05■■□□□ 1.44
CBX4O00257 AC120024.1-201ENST00000562672 995 ntBASIC24.05■■□□□ 1.44
CBX4O00257 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC24.05■■□□□ 1.44
CBX4O00257 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CBX4O00257 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.04■■□□□ 1.44
CBX4O00257 SLC6A10P-202ENST00000431994 2058 ntBASIC24.04■■□□□ 1.44
CBX4O00257 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
CBX4O00257 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
CBX4O00257 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.03■■□□□ 1.44
CBX4O00257 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CBX4O00257 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CBX4O00257 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.03■■□□□ 1.44
CBX4O00257 MTURN-203ENST00000409688 843 ntTSL 2 BASIC24.03■■□□□ 1.44
CBX4O00257 PRTG-204ENST00000561292 833 ntTSL 3 BASIC24.03■■□□□ 1.44
CBX4O00257 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.03■■□□□ 1.44
CBX4O00257 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
CBX4O00257 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CBX4O00257 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CBX4O00257 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CBX4O00257 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CBX4O00257 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CBX4O00257 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CBX4O00257 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC24.02■■□□□ 1.44
CBX4O00257 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CBX4O00257 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CBX4O00257 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.02■■□□□ 1.44
CBX4O00257 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.02■■□□□ 1.44
CBX4O00257 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.02■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms