Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21■□□□□ 0.95
NKX2-6A6NCS4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-6A6NCS4 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
NKX2-6A6NCS4 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21■□□□□ 0.95
NKX2-6A6NCS4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21■□□□□ 0.95
NKX2-6A6NCS4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21■□□□□ 0.95
NKX2-6A6NCS4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
NKX2-6A6NCS4 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21■□□□□ 0.95
NKX2-6A6NCS4 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21■□□□□ 0.95
NKX2-6A6NCS4 AP004609.3-201ENST00000610705 1884 ntBASIC21■□□□□ 0.95
NKX2-6A6NCS4 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
NKX2-6A6NCS4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-6A6NCS4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-6A6NCS4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-6A6NCS4 MIR4281-201ENST00000580852 62 ntBASIC20.99■□□□□ 0.95
NKX2-6A6NCS4 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-6A6NCS4 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-6A6NCS4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.98■□□□□ 0.95
NKX2-6A6NCS4 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-6A6NCS4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-6A6NCS4 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-6A6NCS4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-6A6NCS4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-6A6NCS4 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.97■□□□□ 0.95
NKX2-6A6NCS4 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.97■□□□□ 0.95
NKX2-6A6NCS4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.97■□□□□ 0.95
NKX2-6A6NCS4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-6A6NCS4 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-6A6NCS4 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-6A6NCS4 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
NKX2-6A6NCS4 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-6A6NCS4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-6A6NCS4 MIR638-201ENST00000385237 100 ntBASIC20.96■□□□□ 0.95
NKX2-6A6NCS4 AC131281.2-201ENST00000520478 145 ntBASIC20.96■□□□□ 0.95
NKX2-6A6NCS4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.96■□□□□ 0.95
NKX2-6A6NCS4 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
NKX2-6A6NCS4 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-6A6NCS4 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-6A6NCS4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
NKX2-6A6NCS4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.95
NKX2-6A6NCS4 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-6A6NCS4 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.95■□□□□ 0.94
NKX2-6A6NCS4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-6A6NCS4 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-6A6NCS4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.95■□□□□ 0.94
NKX2-6A6NCS4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.95■□□□□ 0.94
NKX2-6A6NCS4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.95■□□□□ 0.94
NKX2-6A6NCS4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-6A6NCS4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.95■□□□□ 0.94
NKX2-6A6NCS4 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-6A6NCS4 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.94■□□□□ 0.94
NKX2-6A6NCS4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-6A6NCS4 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-6A6NCS4 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.94■□□□□ 0.94
NKX2-6A6NCS4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.94■□□□□ 0.94
NKX2-6A6NCS4 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
NKX2-6A6NCS4 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 AC010997.5-201ENST00000609182 354 ntBASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-6A6NCS4 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-6A6NCS4 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.92■□□□□ 0.94
NKX2-6A6NCS4 AL136116.3-201ENST00000402907 1138 ntBASIC20.92■□□□□ 0.94
NKX2-6A6NCS4 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-6A6NCS4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-6A6NCS4 AL139246.5-201ENST00000606645 996 ntBASIC20.92■□□□□ 0.94
NKX2-6A6NCS4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-6A6NCS4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.92■□□□□ 0.94
NKX2-6A6NCS4 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.92■□□□□ 0.94
NKX2-6A6NCS4 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-6A6NCS4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-6A6NCS4 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.91■□□□□ 0.94
NKX2-6A6NCS4 MTDHP2-201ENST00000601468 714 ntBASIC20.91■□□□□ 0.94
NKX2-6A6NCS4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.91■□□□□ 0.94
NKX2-6A6NCS4 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
NKX2-6A6NCS4 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 AL117332.1-201ENST00000622628 974 ntBASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
NKX2-6A6NCS4 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.89■□□□□ 0.93
NKX2-6A6NCS4 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-6A6NCS4 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.89■□□□□ 0.93
NKX2-6A6NCS4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms