Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 AC073210.2-201ENST00000430369 194 ntBASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 DBI-210ENST00000542275 757 ntTSL 5 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 AC027682.1-201ENST00000562846 899 ntBASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 TRIR-202ENST00000588213 841 ntTSL 3 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 MEX3B-202ENST00000558133 4333 ntBASIC8.33□□□□□ -1.08
LINC01558Q9Y6Z2 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 AC099521.2-201ENST00000619354 2036 ntBASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 NXN-202ENST00000537628 1340 ntTSL 3 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 AC004241.5-201ENST00000623870 2448 ntBASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 AC020658.7-201ENST00000624274 2442 ntBASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 TSPY9P-201ENST00000440215 945 ntBASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 AL355355.2-201ENST00000442321 338 ntBASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 TSPY11P-201ENST00000442607 1045 ntBASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 PRTG-204ENST00000561292 833 ntTSL 3 BASIC8.32□□□□□ -1.08
LINC01558Q9Y6Z2 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC8.32□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms