Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 AC067863.1-201ENST00000494933 530 ntBASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 MIR6080-201ENST00000617359 66 ntBASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 AL592424.1-201ENST00000563624 1536 ntBASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 TUBB3P1-201ENST00000405796 1332 ntBASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 FAM86GP-201ENST00000448322 971 ntBASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 RFPL4AP1-201ENST00000530883 850 ntBASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 AC027796.2-201ENST00000575326 344 ntBASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 MIR4453-201ENST00000584019 89 ntBASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM39Q9HCM9 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TRIM39Q9HCM9 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms