Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC17.47■□□□□ 0.39
LRCH3Q96II8 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.47■□□□□ 0.39
LRCH3Q96II8 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LRCH3Q96II8 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.47■□□□□ 0.39
LRCH3Q96II8 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
LRCH3Q96II8 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
LRCH3Q96II8 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.47■□□□□ 0.39
LRCH3Q96II8 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
LRCH3Q96II8 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LRCH3Q96II8 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
LRCH3Q96II8 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 HLA-DQB2-229ENST00000411527 1059 ntBASIC17.46■□□□□ 0.39
LRCH3Q96II8 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 Z93015.1-201ENST00000451718 390 ntBASIC17.46■□□□□ 0.39
LRCH3Q96II8 AL591846.1-201ENST00000451736 433 ntBASIC17.46■□□□□ 0.39
LRCH3Q96II8 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.46■□□□□ 0.39
LRCH3Q96II8 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 AC005695.3-201ENST00000614522 232 ntBASIC17.46■□□□□ 0.39
LRCH3Q96II8 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LRCH3Q96II8 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.38
LRCH3Q96II8 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
LRCH3Q96II8 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.46■□□□□ 0.38
LRCH3Q96II8 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
LRCH3Q96II8 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LRCH3Q96II8 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LRCH3Q96II8 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LRCH3Q96II8 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LRCH3Q96II8 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LRCH3Q96II8 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
LRCH3Q96II8 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LRCH3Q96II8 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LRCH3Q96II8 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.44■□□□□ 0.38
LRCH3Q96II8 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms