Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC4P56524 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC4P56524 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.98■□□□□ 0.31
HDAC4P56524 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.98■□□□□ 0.31
HDAC4P56524 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC4P56524 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.98■□□□□ 0.31
HDAC4P56524 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC4P56524 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC4P56524 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HDAC4P56524 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HDAC4P56524 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC4P56524 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC4P56524 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC4P56524 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HDAC4P56524 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.97■□□□□ 0.31
HDAC4P56524 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC4P56524 AC004461.1-201ENST00000412461 403 ntBASIC16.97■□□□□ 0.31
HDAC4P56524 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.97■□□□□ 0.31
HDAC4P56524 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.97■□□□□ 0.31
HDAC4P56524 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 KRT8P23-201ENST00000560090 1207 ntBASIC16.97■□□□□ 0.31
HDAC4P56524 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC4P56524 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.97■□□□□ 0.31
HDAC4P56524 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.97■□□□□ 0.31
HDAC4P56524 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HDAC4P56524 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
HDAC4P56524 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC4P56524 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HDAC4P56524 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 AC008741.2-201ENST00000612792 3115 ntBASIC16.96■□□□□ 0.31
HDAC4P56524 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC4P56524 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC4P56524 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.31
HDAC4P56524 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC4P56524 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.96■□□□□ 0.31
HDAC4P56524 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
HDAC4P56524 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 IGHV3-62-201ENST00000520057 340 ntBASIC16.96■□□□□ 0.31
HDAC4P56524 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.96■□□□□ 0.31
HDAC4P56524 AC093520.2-201ENST00000561830 333 ntBASIC16.96■□□□□ 0.31
HDAC4P56524 AL365330.1-201ENST00000607459 531 ntBASIC16.96■□□□□ 0.31
HDAC4P56524 AC055717.3-201ENST00000622967 595 ntBASIC16.96■□□□□ 0.31
HDAC4P56524 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
HDAC4P56524 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC4P56524 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.96■□□□□ 0.31
HDAC4P56524 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC4P56524 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
HDAC4P56524 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HDAC4P56524 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HDAC4P56524 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HDAC4P56524 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.96■□□□□ 0.3
HDAC4P56524 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.96■□□□□ 0.3
HDAC4P56524 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.96■□□□□ 0.3
HDAC4P56524 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HDAC4P56524 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.96■□□□□ 0.3
HDAC4P56524 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.95■□□□□ 0.3
HDAC4P56524 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HDAC4P56524 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
HDAC4P56524 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HDAC4P56524 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms