Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.04■□□□□ 0.32
APOEP02649 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.04■□□□□ 0.32
APOEP02649 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.04■□□□□ 0.32
APOEP02649 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.04■□□□□ 0.32
APOEP02649 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.04■□□□□ 0.32
APOEP02649 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.04■□□□□ 0.32
APOEP02649 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.04■□□□□ 0.32
APOEP02649 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.04■□□□□ 0.32
APOEP02649 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
APOEP02649 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
APOEP02649 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.04■□□□□ 0.32
APOEP02649 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
APOEP02649 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
APOEP02649 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
APOEP02649 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
APOEP02649 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 AC004449.1-201ENST00000564240 433 ntBASIC17.03■□□□□ 0.32
APOEP02649 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.03■□□□□ 0.32
APOEP02649 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.03■□□□□ 0.32
APOEP02649 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.03■□□□□ 0.32
APOEP02649 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 LINC00628-201ENST00000628516 1289 ntBASIC17.03■□□□□ 0.32
APOEP02649 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.03■□□□□ 0.32
APOEP02649 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.03■□□□□ 0.32
APOEP02649 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.03■□□□□ 0.32
APOEP02649 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOEP02649 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
APOEP02649 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 MTHFR-217ENST00000641820 1569 ntBASIC17.02■□□□□ 0.32
APOEP02649 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
APOEP02649 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
APOEP02649 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
APOEP02649 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
APOEP02649 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
APOEP02649 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
APOEP02649 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 AC022188.1-201ENST00000620960 1664 ntBASIC17.02■□□□□ 0.32
APOEP02649 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
APOEP02649 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
APOEP02649 AC098859.1-201ENST00000502915 1238 ntBASIC17.02■□□□□ 0.32
APOEP02649 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 SPTSSB-204ENST00000617024 1292 ntBASIC17.02■□□□□ 0.32
APOEP02649 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.02■□□□□ 0.32
APOEP02649 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
APOEP02649 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.02■□□□□ 0.32
APOEP02649 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.02■□□□□ 0.31
APOEP02649 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.02■□□□□ 0.31
APOEP02649 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms