Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 FAM220BP-201ENST00000377689 816 ntBASIC12.57□□□□□ -0.4
CCDC140Q96MF4 HLA-H-201ENST00000383620 1096 ntBASIC12.57□□□□□ -0.4
CCDC140Q96MF4 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 RNA5SP410-201ENST00000516285 106 ntBASIC12.57□□□□□ -0.4
CCDC140Q96MF4 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 AC007950.2-201ENST00000615045 2347 ntBASIC12.57□□□□□ -0.4
CCDC140Q96MF4 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 F11R-206ENST00000621309 4770 ntTSL 5 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC12.57□□□□□ -0.4
CCDC140Q96MF4 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AC112504.1-201ENST00000623415 1841 ntBASIC12.56□□□□□ -0.4
CCDC140Q96MF4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AC211486.1-202ENST00000416371 468 ntBASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AL627223.1-201ENST00000416693 442 ntBASIC12.56□□□□□ -0.4
CCDC140Q96MF4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AC005237.2-201ENST00000434368 219 ntBASIC12.56□□□□□ -0.4
CCDC140Q96MF4 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AC211476.1-201ENST00000503899 468 ntBASIC12.56□□□□□ -0.4
CCDC140Q96MF4 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AC024267.1-201ENST00000582320 895 ntBASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms