Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 AC022188.1-201ENST00000620960 1664 ntBASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 RN7SL589P-201ENST00000481268 310 ntBASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 AC109635.5-201ENST00000533593 962 ntBASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 AC006449.6-201ENST00000612330 2296 ntBASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.39■□□□□ 0.7
CHMP4CQ96CF2 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.39■□□□□ 0.7
CHMP4CQ96CF2 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.39■□□□□ 0.7
CHMP4CQ96CF2 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4CQ96CF2 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4CQ96CF2 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4CQ96CF2 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4CQ96CF2 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 GPS2P2-201ENST00000430745 888 ntBASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 HLA-J-203ENST00000494367 1087 ntBASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 AKAP8P1-201ENST00000434743 1349 ntBASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4CQ96CF2 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 DUX4L27-201ENST00000554796 1261 ntBASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms