Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.19■□□□□ 0.34
LIG3P49916 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.19■□□□□ 0.34
LIG3P49916 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LIG3P49916 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
LIG3P49916 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.19■□□□□ 0.34
LIG3P49916 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.19■□□□□ 0.34
LIG3P49916 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LIG3P49916 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC17.18■□□□□ 0.34
LIG3P49916 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
LIG3P49916 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.18■□□□□ 0.34
LIG3P49916 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.18■□□□□ 0.34
LIG3P49916 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
LIG3P49916 CRYGEP-201ENST00000412192 528 ntBASIC17.18■□□□□ 0.34
LIG3P49916 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
LIG3P49916 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.18■□□□□ 0.34
LIG3P49916 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.18■□□□□ 0.34
LIG3P49916 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.18■□□□□ 0.34
LIG3P49916 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.18■□□□□ 0.34
LIG3P49916 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.18■□□□□ 0.34
LIG3P49916 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.18■□□□□ 0.34
LIG3P49916 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.18■□□□□ 0.34
LIG3P49916 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
LIG3P49916 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.18■□□□□ 0.34
LIG3P49916 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.18■□□□□ 0.34
LIG3P49916 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
LIG3P49916 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
LIG3P49916 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.18■□□□□ 0.34
LIG3P49916 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.18■□□□□ 0.34
LIG3P49916 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC17.18■□□□□ 0.34
LIG3P49916 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
LIG3P49916 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIG3P49916 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.18■□□□□ 0.34
LIG3P49916 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.17■□□□□ 0.34
LIG3P49916 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.17■□□□□ 0.34
LIG3P49916 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
LIG3P49916 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.17■□□□□ 0.34
LIG3P49916 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
LIG3P49916 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
LIG3P49916 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
LIG3P49916 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 MRPL20P1-201ENST00000400819 433 ntBASIC17.17■□□□□ 0.34
LIG3P49916 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.17■□□□□ 0.34
LIG3P49916 PRSS29P-201ENST00000440800 595 ntBASIC17.17■□□□□ 0.34
LIG3P49916 VN2R19P-201ENST00000442399 1052 ntBASIC17.17■□□□□ 0.34
LIG3P49916 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.17■□□□□ 0.34
LIG3P49916 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.17■□□□□ 0.34
LIG3P49916 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.17■□□□□ 0.34
LIG3P49916 RNA5SP416-201ENST00000516838 111 ntBASIC17.17■□□□□ 0.34
LIG3P49916 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.17■□□□□ 0.34
LIG3P49916 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
LIG3P49916 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.17■□□□□ 0.34
LIG3P49916 AC064836.3-201ENST00000607928 673 ntBASIC17.17■□□□□ 0.34
LIG3P49916 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.17■□□□□ 0.34
LIG3P49916 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.17■□□□□ 0.34
LIG3P49916 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
LIG3P49916 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.17■□□□□ 0.34
LIG3P49916 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
LIG3P49916 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC17.17■□□□□ 0.34
LIG3P49916 BANP-203ENST00000393207 2438 ntTSL 2 BASIC17.17■□□□□ 0.34
LIG3P49916 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIG3P49916 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.16■□□□□ 0.34
LIG3P49916 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC17.16■□□□□ 0.34
LIG3P49916 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms