Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CDX1P47902 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.36□□□□□ -0.27
CDX1P47902 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 AL365209.1-201ENST00000624418 6473 ntBASIC13.36□□□□□ -0.27
CDX1P47902 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC13.36□□□□□ -0.27
CDX1P47902 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 AC092364.2-201ENST00000596710 2692 ntBASIC13.36□□□□□ -0.27
CDX1P47902 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
CDX1P47902 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.36□□□□□ -0.27
CDX1P47902 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.36□□□□□ -0.27
CDX1P47902 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC13.36□□□□□ -0.27
CDX1P47902 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC13.36□□□□□ -0.27
CDX1P47902 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CDX1P47902 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
CDX1P47902 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CDX1P47902 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC13.35□□□□□ -0.27
CDX1P47902 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.35□□□□□ -0.27
CDX1P47902 AC005089.1-201ENST00000619486 2241 ntBASIC13.35□□□□□ -0.27
CDX1P47902 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CDX1P47902 MRPL20P1-201ENST00000400819 433 ntBASIC13.35□□□□□ -0.27
CDX1P47902 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
CDX1P47902 AC108073.2-201ENST00000464002 357 ntBASIC13.35□□□□□ -0.27
CDX1P47902 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.35□□□□□ -0.27
CDX1P47902 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.35□□□□□ -0.27
CDX1P47902 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 AC040169.1-201ENST00000565382 521 ntBASIC13.35□□□□□ -0.27
CDX1P47902 AC023511.2-201ENST00000618803 211 ntBASIC13.35□□□□□ -0.27
CDX1P47902 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.35□□□□□ -0.27
CDX1P47902 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CDX1P47902 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.35□□□□□ -0.27
CDX1P47902 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.35□□□□□ -0.27
CDX1P47902 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.35□□□□□ -0.27
CDX1P47902 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC13.35□□□□□ -0.27
CDX1P47902 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.35□□□□□ -0.27
CDX1P47902 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.35□□□□□ -0.27
CDX1P47902 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CDX1P47902 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 PI4KAP1-204ENST00000612579 1703 ntBASIC13.34□□□□□ -0.27
CDX1P47902 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 AC013268.4-201ENST00000637413 2228 ntBASIC13.34□□□□□ -0.27
CDX1P47902 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms