Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDGFRAP16234 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDGFRAP16234 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDGFRAP16234 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.07■□□□□ 0.32
PDGFRAP16234 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDGFRAP16234 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.07■□□□□ 0.32
PDGFRAP16234 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.07■□□□□ 0.32
PDGFRAP16234 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.07■□□□□ 0.32
PDGFRAP16234 AC098859.1-201ENST00000502915 1238 ntBASIC17.07■□□□□ 0.32
PDGFRAP16234 IGHV3-62-201ENST00000520057 340 ntBASIC17.07■□□□□ 0.32
PDGFRAP16234 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.07■□□□□ 0.32
PDGFRAP16234 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.07■□□□□ 0.32
PDGFRAP16234 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.07■□□□□ 0.32
PDGFRAP16234 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.07■□□□□ 0.32
PDGFRAP16234 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.07■□□□□ 0.32
PDGFRAP16234 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.07■□□□□ 0.32
PDGFRAP16234 AC004835.2-201ENST00000603762 682 ntBASIC17.07■□□□□ 0.32
PDGFRAP16234 AC027612.4-201ENST00000605371 583 ntBASIC17.07■□□□□ 0.32
PDGFRAP16234 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.07■□□□□ 0.32
PDGFRAP16234 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDGFRAP16234 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.07■□□□□ 0.32
PDGFRAP16234 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
PDGFRAP16234 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.07■□□□□ 0.32
PDGFRAP16234 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.07■□□□□ 0.32
PDGFRAP16234 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PDGFRAP16234 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PDGFRAP16234 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.07■□□□□ 0.32
PDGFRAP16234 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDGFRAP16234 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDGFRAP16234 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.07■□□□□ 0.32
PDGFRAP16234 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PDGFRAP16234 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.06■□□□□ 0.32
PDGFRAP16234 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 FOXO1B-201ENST00000504678 1527 ntBASIC17.06■□□□□ 0.32
PDGFRAP16234 AL603832.2-201ENST00000566195 2125 ntBASIC17.06■□□□□ 0.32
PDGFRAP16234 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.06■□□□□ 0.32
PDGFRAP16234 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.06■□□□□ 0.32
PDGFRAP16234 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 MIR648-201ENST00000385046 94 ntBASIC17.06■□□□□ 0.32
PDGFRAP16234 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.06■□□□□ 0.32
PDGFRAP16234 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.06■□□□□ 0.32
PDGFRAP16234 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 AL592309.1-201ENST00000443127 649 ntBASIC17.06■□□□□ 0.32
PDGFRAP16234 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PDGFRAP16234 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.06■□□□□ 0.32
PDGFRAP16234 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PDGFRAP16234 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
PDGFRAP16234 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.06■□□□□ 0.32
PDGFRAP16234 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PDGFRAP16234 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
PDGFRAP16234 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDGFRAP16234 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.06■□□□□ 0.32
PDGFRAP16234 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDGFRAP16234 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDGFRAP16234 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.05■□□□□ 0.32
PDGFRAP16234 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDGFRAP16234 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.05■□□□□ 0.32
PDGFRAP16234 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PDGFRAP16234 FER1L4-210ENST00000615531 5998 ntBASIC17.05■□□□□ 0.32
PDGFRAP16234 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDGFRAP16234 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PDGFRAP16234 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PDGFRAP16234 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDGFRAP16234 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.05■□□□□ 0.32
PDGFRAP16234 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.05■□□□□ 0.32
PDGFRAP16234 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDGFRAP16234 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDGFRAP16234 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PDGFRAP16234 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDGFRAP16234 MIR346-201ENST00000362234 95 ntBASIC17.05■□□□□ 0.32
PDGFRAP16234 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
PDGFRAP16234 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.05■□□□□ 0.32
PDGFRAP16234 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.05■□□□□ 0.32
PDGFRAP16234 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.05■□□□□ 0.32
PDGFRAP16234 KRT8P23-201ENST00000560090 1207 ntBASIC17.05■□□□□ 0.32
PDGFRAP16234 AP000842.3-202ENST00000569238 1080 ntBASIC17.05■□□□□ 0.32
PDGFRAP16234 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms