Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AC009336.1-201ENST00000608941 1553 ntBASIC12.29□□□□□ -0.44
HLA-DQA1P01909 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 LINC01144-201ENST00000626198 1710 ntBASIC12.28□□□□□ -0.44
HLA-DQA1P01909 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 MROH4P-201ENST00000431302 1578 ntBASIC12.28□□□□□ -0.44
HLA-DQA1P01909 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 CD70-202ENST00000423145 881 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 AC010203.1-204ENST00000548782 407 ntBASIC12.28□□□□□ -0.44
HLA-DQA1P01909 NEK4P2-201ENST00000580004 1012 ntBASIC12.28□□□□□ -0.44
HLA-DQA1P01909 USF2-205ENST00000594064 1179 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 AC140113.3-201ENST00000605663 199 ntBASIC12.28□□□□□ -0.44
HLA-DQA1P01909 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 AC004817.3-201ENST00000602957 2129 ntBASIC12.28□□□□□ -0.44
HLA-DQA1P01909 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DQA1P01909 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.44
HLA-DQA1P01909 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DQA1P01909 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.27□□□□□ -0.44
HLA-DQA1P01909 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DQA1P01909 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC12.27□□□□□ -0.44
HLA-DQA1P01909 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DQA1P01909 AC005912.2-201ENST00000619492 2400 ntBASIC12.27□□□□□ -0.44
HLA-DQA1P01909 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DQA1P01909 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DQA1P01909 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.27□□□□□ -0.44
HLA-DQA1P01909 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DQA1P01909 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms