Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC13.16□□□□□ -0.3
HMGB3O15347 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC13.16□□□□□ -0.3
HMGB3O15347 AC103564.2-201ENST00000432853 1299 ntBASIC13.16□□□□□ -0.3
HMGB3O15347 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC13.16□□□□□ -0.3
HMGB3O15347 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HMGB3O15347 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC13.16□□□□□ -0.3
HMGB3O15347 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC13.16□□□□□ -0.3
HMGB3O15347 AC005332.3-201ENST00000589904 676 ntBASIC13.16□□□□□ -0.3
HMGB3O15347 VPS72-207ENST00000640458 689 ntTSL 5 BASIC13.16□□□□□ -0.3
HMGB3O15347 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 KIAA1614-202ENST00000367588 9654 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 AC055713.1-201ENST00000498967 8279 ntTSL 2 BASIC13.16□□□□□ -0.3
HMGB3O15347 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 LINC00895-201ENST00000629028 1637 ntBASIC13.16□□□□□ -0.3
HMGB3O15347 AC099063.4-201ENST00000641099 1602 ntBASIC13.16□□□□□ -0.3
HMGB3O15347 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.16□□□□□ -0.3
HMGB3O15347 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.16□□□□□ -0.3
HMGB3O15347 AC022532.1-201ENST00000624563 1728 ntBASIC13.16□□□□□ -0.3
HMGB3O15347 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HMGB3O15347 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HMGB3O15347 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
HMGB3O15347 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 GREB1-201ENST00000234142 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HMGB3O15347 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC13.15□□□□□ -0.3
HMGB3O15347 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HMGB3O15347 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 AL671710.1-201ENST00000610245 2349 ntBASIC13.15□□□□□ -0.3
HMGB3O15347 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC13.15□□□□□ -0.3
HMGB3O15347 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
HMGB3O15347 CRAT-202ENST00000393384 973 ntTSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
HMGB3O15347 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 AC122714.2-201ENST00000502787 707 ntBASIC13.15□□□□□ -0.3
HMGB3O15347 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC13.15□□□□□ -0.3
HMGB3O15347 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 AL021920.2-201ENST00000624828 1351 ntBASIC13.15□□□□□ -0.3
HMGB3O15347 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.15□□□□□ -0.3
HMGB3O15347 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
HMGB3O15347 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 MYT1-201ENST00000328439 5535 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HMGB3O15347 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
HMGB3O15347 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC13.15□□□□□ -0.31
HMGB3O15347 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.15□□□□□ -0.31
HMGB3O15347 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HMGB3O15347 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
HMGB3O15347 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms