Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX1O00570 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SOX1O00570 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SOX1O00570 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX1O00570 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
SOX1O00570 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SOX1O00570 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SOX1O00570 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX1O00570 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SOX1O00570 SNX33P1-201ENST00000592116 1762 ntBASIC17.05■□□□□ 0.32
SOX1O00570 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX1O00570 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX1O00570 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SOX1O00570 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX1O00570 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
SOX1O00570 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX1O00570 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.04■□□□□ 0.32
SOX1O00570 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
SOX1O00570 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 REXO1L8P-201ENST00000604378 1897 ntBASIC17.04■□□□□ 0.32
SOX1O00570 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX1O00570 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX1O00570 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SOX1O00570 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX1O00570 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.04■□□□□ 0.32
SOX1O00570 AC007663.3-201ENST00000609632 465 ntBASIC17.04■□□□□ 0.32
SOX1O00570 AP001527.2-201ENST00000614441 631 ntBASIC17.04■□□□□ 0.32
SOX1O00570 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.04■□□□□ 0.32
SOX1O00570 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SOX1O00570 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.04■□□□□ 0.32
SOX1O00570 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX1O00570 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.04■□□□□ 0.32
SOX1O00570 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SOX1O00570 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX1O00570 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
SOX1O00570 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 ACKR1-201ENST00000368121 1240 ntBASIC17.03■□□□□ 0.32
SOX1O00570 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC17.03■□□□□ 0.32
SOX1O00570 RPSAP31-201ENST00000416648 895 ntBASIC17.03■□□□□ 0.32
SOX1O00570 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.03■□□□□ 0.32
SOX1O00570 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 AC234782.1-201ENST00000451950 919 ntBASIC17.03■□□□□ 0.32
SOX1O00570 RN7SL8P-201ENST00000461771 266 ntBASIC17.03■□□□□ 0.32
SOX1O00570 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.03■□□□□ 0.32
SOX1O00570 SERPINA13P-202ENST00000478994 924 ntBASIC17.03■□□□□ 0.32
SOX1O00570 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.03■□□□□ 0.32
SOX1O00570 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC17.03■□□□□ 0.32
SOX1O00570 WT1-AS_6.1-201ENST00000614919 121 ntBASIC17.03■□□□□ 0.32
SOX1O00570 AP001065.2-201ENST00000617205 644 ntBASIC17.03■□□□□ 0.32
SOX1O00570 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.03■□□□□ 0.32
SOX1O00570 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX1O00570 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.03■□□□□ 0.32
SOX1O00570 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX1O00570 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
SOX1O00570 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.02■□□□□ 0.32
SOX1O00570 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
SOX1O00570 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX1O00570 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
SOX1O00570 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX1O00570 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.02■□□□□ 0.32
SOX1O00570 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SOX1O00570 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX1O00570 AC093525.9-201ENST00000624961 1746 ntBASIC17.02■□□□□ 0.32
SOX1O00570 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms