Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 AC093028.1-201ENST00000622998 982 ntBASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 AC024267.1-201ENST00000582320 895 ntBASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 PCDHB19P-201ENST00000570871 2371 ntBASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TRIM39Q9HCM9 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 LINC00554-201ENST00000564841 3011 ntBASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 AC015911.4-201ENST00000588022 1070 ntBASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 AC018529.1-201ENST00000613063 361 ntBASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM39Q9HCM9 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
TRIM39Q9HCM9 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
TRIM39Q9HCM9 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms