Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MSH3P20585 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MSH3P20585 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.24■□□□□ 0.19
MSH3P20585 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.23■□□□□ 0.19
MSH3P20585 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.23■□□□□ 0.19
MSH3P20585 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.23■□□□□ 0.19
MSH3P20585 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.23■□□□□ 0.19
MSH3P20585 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.23■□□□□ 0.19
MSH3P20585 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
MSH3P20585 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
MSH3P20585 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
MSH3P20585 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.23■□□□□ 0.19
MSH3P20585 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.23■□□□□ 0.19
MSH3P20585 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.23■□□□□ 0.19
MSH3P20585 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.23■□□□□ 0.19
MSH3P20585 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.23■□□□□ 0.19
MSH3P20585 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.23■□□□□ 0.19
MSH3P20585 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 DNAJB3-202ENST00000449667 1266 ntBASIC16.23■□□□□ 0.19
MSH3P20585 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.23■□□□□ 0.19
MSH3P20585 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.23■□□□□ 0.19
MSH3P20585 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.23■□□□□ 0.19
MSH3P20585 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.23■□□□□ 0.19
MSH3P20585 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.23■□□□□ 0.19
MSH3P20585 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.23■□□□□ 0.19
MSH3P20585 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.23■□□□□ 0.19
MSH3P20585 AC073389.1-201ENST00000595595 795 ntBASIC16.23■□□□□ 0.19
MSH3P20585 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
MSH3P20585 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSH3P20585 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.23■□□□□ 0.19
MSH3P20585 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.23■□□□□ 0.19
MSH3P20585 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
MSH3P20585 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.23■□□□□ 0.19
MSH3P20585 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.22■□□□□ 0.19
MSH3P20585 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.22■□□□□ 0.19
MSH3P20585 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
MSH3P20585 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.22■□□□□ 0.19
MSH3P20585 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.22■□□□□ 0.19
MSH3P20585 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
MSH3P20585 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.22■□□□□ 0.19
MSH3P20585 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.22■□□□□ 0.19
MSH3P20585 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.22■□□□□ 0.19
MSH3P20585 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.22■□□□□ 0.19
MSH3P20585 AC069335.1-201ENST00000489972 472 ntBASIC16.22■□□□□ 0.19
MSH3P20585 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.22■□□□□ 0.19
MSH3P20585 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.22■□□□□ 0.19
MSH3P20585 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.22■□□□□ 0.19
MSH3P20585 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
MSH3P20585 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.22■□□□□ 0.19
MSH3P20585 LINC01225-203ENST00000563550 1244 ntBASIC16.22■□□□□ 0.19
MSH3P20585 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.22■□□□□ 0.19
MSH3P20585 AP000842.3-202ENST00000569238 1080 ntBASIC16.22■□□□□ 0.19
MSH3P20585 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 GPALPP1-207ENST00000611650 899 ntBASIC16.22■□□□□ 0.19
MSH3P20585 AC006538.3-201ENST00000612495 578 ntBASIC16.22■□□□□ 0.19
MSH3P20585 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
MSH3P20585 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.22■□□□□ 0.19
MSH3P20585 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.22■□□□□ 0.19
MSH3P20585 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
MSH3P20585 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSH3P20585 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.22■□□□□ 0.19
MSH3P20585 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 AC022188.1-201ENST00000620960 1664 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms