Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 FAM86MP-201ENST00000340703 885 ntBASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 AC245100.3-201ENST00000441281 285 ntBASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 AC025048.3-201ENST00000590609 569 ntBASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 AC005702.4-201ENST00000618393 416 ntBASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDHGA1Q9Y5H4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 REXO1L6P-201ENST00000603433 1515 ntBASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PCDHGA1Q9Y5H4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 AC092552.1-201ENST00000547243 906 ntBASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 SNX29P1-201ENST00000548357 1007 ntBASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 AL133338.1-201ENST00000565695 1517 ntBASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PCDHGA1Q9Y5H4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDHGA1Q9Y5H4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms