Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.73■□□□□ 0.11
VPS33AQ96AX1 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS33AQ96AX1 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 AC005622.1-201ENST00000636801 1703 ntBASIC15.72■□□□□ 0.11
VPS33AQ96AX1 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 AC020765.3-201ENST00000613051 740 ntBASIC15.72■□□□□ 0.11
VPS33AQ96AX1 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.72■□□□□ 0.11
VPS33AQ96AX1 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS33AQ96AX1 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 AC021087.4-201ENST00000563761 564 ntBASIC15.71■□□□□ 0.11
VPS33AQ96AX1 AC005412.3-201ENST00000580309 715 ntBASIC15.71■□□□□ 0.11
VPS33AQ96AX1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.71■□□□□ 0.11
VPS33AQ96AX1 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
VPS33AQ96AX1 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
VPS33AQ96AX1 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
VPS33AQ96AX1 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 MIR600HG-201ENST00000449175 5984 ntBASIC15.7■□□□□ 0.1
VPS33AQ96AX1 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS33AQ96AX1 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms