Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTP4A1Q93096 FAM185BP-201ENST00000443595 716 ntBASIC14.68□□□□□ -0.06
PTP4A1Q93096 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.68□□□□□ -0.06
PTP4A1Q93096 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTP4A1Q93096 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTP4A1Q93096 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTP4A1Q93096 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTP4A1Q93096 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTP4A1Q93096 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTP4A1Q93096 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.68□□□□□ -0.06
PTP4A1Q93096 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 U82695.1-201ENST00000635752 1889 ntBASIC14.67□□□□□ -0.06
PTP4A1Q93096 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 AC012640.2-201ENST00000561606 901 ntBASIC14.67□□□□□ -0.06
PTP4A1Q93096 SLC25A6P4-201ENST00000586535 553 ntBASIC14.67□□□□□ -0.06
PTP4A1Q93096 ACTL9-202ENST00000612068 1252 ntBASIC14.67□□□□□ -0.06
PTP4A1Q93096 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 AC004790.2-201ENST00000623588 572 ntBASIC14.67□□□□□ -0.06
PTP4A1Q93096 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 AC008677.1-201ENST00000519230 1561 ntBASIC14.67□□□□□ -0.06
PTP4A1Q93096 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTP4A1Q93096 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
PTP4A1Q93096 AP003680.1-201ENST00000598970 3660 ntBASIC14.67□□□□□ -0.06
PTP4A1Q93096 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTP4A1Q93096 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTP4A1Q93096 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PTP4A1Q93096 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.66□□□□□ -0.06
PTP4A1Q93096 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PTP4A1Q93096 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTP4A1Q93096 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTP4A1Q93096 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTP4A1Q93096 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.66□□□□□ -0.06
PTP4A1Q93096 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.66□□□□□ -0.06
PTP4A1Q93096 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms