Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.47□□□□□ -0.09
SKA3Q8IX90 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 HTR5BP-201ENST00000430851 1154 ntBASIC14.47□□□□□ -0.09
SKA3Q8IX90 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 DNAJB3-201ENST00000446806 729 ntBASIC14.47□□□□□ -0.09
SKA3Q8IX90 ALG1L5P-201ENST00000482043 771 ntBASIC14.47□□□□□ -0.09
SKA3Q8IX90 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.47□□□□□ -0.09
SKA3Q8IX90 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.47□□□□□ -0.09
SKA3Q8IX90 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
SKA3Q8IX90 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 BX842568.4-201ENST00000421222 227 ntBASIC14.46□□□□□ -0.09
SKA3Q8IX90 MKNK2P1-201ENST00000437526 628 ntBASIC14.46□□□□□ -0.09
SKA3Q8IX90 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 AC112482.1-201ENST00000492080 688 ntBASIC14.46□□□□□ -0.09
SKA3Q8IX90 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 CALM1-205ENST00000553542 877 ntTSL 5 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 RARRES2P8-201ENST00000566335 367 ntBASIC14.46□□□□□ -0.09
SKA3Q8IX90 AC005829.1-201ENST00000570002 483 ntBASIC14.46□□□□□ -0.09
SKA3Q8IX90 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SKA3Q8IX90 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.46□□□□□ -0.09
SKA3Q8IX90 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.46□□□□□ -0.1
SKA3Q8IX90 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SKA3Q8IX90 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms