Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 AC011506.1-201ENST00000474329 610 ntBASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AC022898.2-201ENST00000616822 1312 ntBASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AC097488.1-201ENST00000507834 756 ntBASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 USP36-216ENST00000589424 970 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AC026471.5-201ENST00000615068 467 ntBASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28AQ8IWP9 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms