Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 LINC00554-201ENST00000564841 3011 ntBASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 TSEN15P1-201ENST00000423257 515 ntBASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 AL671277.1-201ENST00000429656 993 ntBASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 HMGN1P19-201ENST00000436976 333 ntBASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 AL161645.1-201ENST00000622716 1255 ntBASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 AC093028.1-201ENST00000622998 982 ntBASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PTCHD3Q3KNS1 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
PTCHD3Q3KNS1 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.96■□□□□ 0.14
PTCHD3Q3KNS1 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
PTCHD3Q3KNS1 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PTCHD3Q3KNS1 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
PTCHD3Q3KNS1 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.96■□□□□ 0.14
PTCHD3Q3KNS1 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PTCHD3Q3KNS1 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
PTCHD3Q3KNS1 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
PTCHD3Q3KNS1 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 KRT8P48-201ENST00000515599 1220 ntBASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 AC106028.4-201ENST00000614509 607 ntBASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 U82695.1-201ENST00000635752 1889 ntBASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PTCHD3Q3KNS1 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 WASH6P-202ENST00000359512 1437 ntBASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 AL592424.1-201ENST00000563624 1536 ntBASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTCHD3Q3KNS1 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms