Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC12.31□□□□□ -0.44
FOXA3P55318 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 NKTR-203ENST00000442970 646 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 SNORA78-201ENST00000459373 127 ntBASIC12.31□□□□□ -0.44
FOXA3P55318 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC12.31□□□□□ -0.44
FOXA3P55318 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC12.31□□□□□ -0.44
FOXA3P55318 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC12.31□□□□□ -0.44
FOXA3P55318 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC12.31□□□□□ -0.44
FOXA3P55318 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC12.31□□□□□ -0.44
FOXA3P55318 CLN6-221ENST00000637494 765 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA3P55318 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA3P55318 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
FOXA3P55318 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.3□□□□□ -0.44
FOXA3P55318 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC12.3□□□□□ -0.44
FOXA3P55318 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
FOXA3P55318 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA3P55318 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
FOXA3P55318 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 PCGF3-213ENST00000620529 1899 ntBASIC12.3□□□□□ -0.44
FOXA3P55318 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.3□□□□□ -0.44
FOXA3P55318 AC126335.2-201ENST00000623362 4637 ntBASIC12.3□□□□□ -0.44
FOXA3P55318 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 COPE-203ENST00000351079 907 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA3P55318 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
FOXA3P55318 RN7SL606P-201ENST00000472779 293 ntBASIC12.3□□□□□ -0.44
FOXA3P55318 AC008550.1-201ENST00000511500 884 ntBASIC12.3□□□□□ -0.44
FOXA3P55318 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC12.3□□□□□ -0.44
FOXA3P55318 AL109954.1-202ENST00000564051 2148 ntBASIC12.3□□□□□ -0.44
FOXA3P55318 AC005336.2-201ENST00000593183 939 ntBASIC12.3□□□□□ -0.44
FOXA3P55318 AC073592.5-201ENST00000624854 528 ntBASIC12.3□□□□□ -0.44
FOXA3P55318 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA3P55318 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC12.3□□□□□ -0.44
FOXA3P55318 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 KRT17P2-201ENST00000300992 1314 ntBASIC12.3□□□□□ -0.44
FOXA3P55318 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.3□□□□□ -0.44
FOXA3P55318 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.3□□□□□ -0.44
FOXA3P55318 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA3P55318 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA3P55318 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.29□□□□□ -0.44
FOXA3P55318 AC136621.1-201ENST00000624017 2304 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms