Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 HIST2H2BC-201ENST00000498492 580 ntBASIC19.17■□□□□ 0.66
COL4A5P29400 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A5P29400 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A5P29400 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A5P29400 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
COL4A5P29400 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL4A5P29400 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A5P29400 UBALD1-205ENST00000590891 2641 ntBASIC19.17■□□□□ 0.66
COL4A5P29400 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL4A5P29400 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
COL4A5P29400 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL4A5P29400 DRD5P1-201ENST00000456605 1438 ntBASIC19.17■□□□□ 0.66
COL4A5P29400 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A5P29400 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL4A5P29400 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A5P29400 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A5P29400 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
COL4A5P29400 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A5P29400 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL4A5P29400 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL4A5P29400 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A5P29400 Z93015.1-201ENST00000451718 390 ntBASIC19.17■□□□□ 0.66
COL4A5P29400 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A5P29400 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A5P29400 RN7SL190P-201ENST00000582519 257 ntBASIC19.17■□□□□ 0.66
COL4A5P29400 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A5P29400 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.17■□□□□ 0.66
COL4A5P29400 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A5P29400 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A5P29400 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A5P29400 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A5P29400 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A5P29400 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC19.16■□□□□ 0.66
COL4A5P29400 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
COL4A5P29400 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A5P29400 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 AC015910.1-201ENST00000579400 975 ntBASIC19.16■□□□□ 0.66
COL4A5P29400 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC19.16■□□□□ 0.66
COL4A5P29400 AL022328.3-201ENST00000607943 679 ntBASIC19.16■□□□□ 0.66
COL4A5P29400 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
COL4A5P29400 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A5P29400 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A5P29400 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A5P29400 AL138709.1-201ENST00000614840 1693 ntBASIC19.16■□□□□ 0.66
COL4A5P29400 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A5P29400 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.15■□□□□ 0.66
COL4A5P29400 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL4A5P29400 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.15■□□□□ 0.66
COL4A5P29400 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL4A5P29400 AC138951.2-201ENST00000623455 1161 ntBASIC19.15■□□□□ 0.66
COL4A5P29400 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A5P29400 AC134407.2-201ENST00000625089 1978 ntBASIC19.15■□□□□ 0.66
COL4A5P29400 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
COL4A5P29400 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL4A5P29400 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
COL4A5P29400 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
COL4A5P29400 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A5P29400 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A5P29400 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A5P29400 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A5P29400 AC006001.1-201ENST00000325130 474 ntBASIC19.14■□□□□ 0.66
COL4A5P29400 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A5P29400 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.66
COL4A5P29400 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.14■□□□□ 0.66
COL4A5P29400 KRT18P43-201ENST00000469825 1281 ntBASIC19.14■□□□□ 0.66
COL4A5P29400 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms