Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.04■□□□□ 0.48
TPM1P09493 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.04■□□□□ 0.48
TPM1P09493 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TPM1P09493 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TPM1P09493 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TPM1P09493 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TPM1P09493 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
TPM1P09493 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.04■□□□□ 0.48
TPM1P09493 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.04■□□□□ 0.48
TPM1P09493 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.04■□□□□ 0.48
TPM1P09493 RBM17P3-201ENST00000417687 1192 ntBASIC18.04■□□□□ 0.48
TPM1P09493 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.04■□□□□ 0.48
TPM1P09493 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.04■□□□□ 0.48
TPM1P09493 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 AC132008.2-207ENST00000454517 770 ntBASIC18.04■□□□□ 0.48
TPM1P09493 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.04■□□□□ 0.48
TPM1P09493 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.04■□□□□ 0.48
TPM1P09493 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.04■□□□□ 0.48
TPM1P09493 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.04■□□□□ 0.48
TPM1P09493 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.04■□□□□ 0.48
TPM1P09493 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.04■□□□□ 0.48
TPM1P09493 NKAPP1-205ENST00000585790 367 ntBASIC18.04■□□□□ 0.48
TPM1P09493 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.04■□□□□ 0.48
TPM1P09493 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC18.04■□□□□ 0.48
TPM1P09493 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC18.04■□□□□ 0.48
TPM1P09493 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TPM1P09493 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TPM1P09493 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TPM1P09493 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.03■□□□□ 0.48
TPM1P09493 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
TPM1P09493 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.03■□□□□ 0.48
TPM1P09493 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.03■□□□□ 0.48
TPM1P09493 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.03■□□□□ 0.48
TPM1P09493 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.03■□□□□ 0.48
TPM1P09493 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
TPM1P09493 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TPM1P09493 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TPM1P09493 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 AC112504.1-201ENST00000623415 1841 ntBASIC18.03■□□□□ 0.48
TPM1P09493 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.03■□□□□ 0.48
TPM1P09493 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.03■□□□□ 0.48
TPM1P09493 AC106795.1-205ENST00000512851 1056 ntBASIC18.03■□□□□ 0.48
TPM1P09493 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.03■□□□□ 0.48
TPM1P09493 MIR3180-1-201ENST00000580374 94 ntBASIC18.03■□□□□ 0.48
TPM1P09493 MIR3180-3-201ENST00000584616 94 ntBASIC18.03■□□□□ 0.48
TPM1P09493 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.03■□□□□ 0.48
TPM1P09493 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.03■□□□□ 0.48
TPM1P09493 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.03■□□□□ 0.48
TPM1P09493 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TPM1P09493 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.03■□□□□ 0.48
TPM1P09493 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.03■□□□□ 0.48
TPM1P09493 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TPM1P09493 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
TPM1P09493 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TPM1P09493 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
TPM1P09493 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.02■□□□□ 0.48
TPM1P09493 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms