Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.68■□□□□ 0.1
SEMA3DO95025 AP002472.1-201ENST00000577490 586 ntBASIC15.68■□□□□ 0.1
SEMA3DO95025 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.68■□□□□ 0.1
SEMA3DO95025 AL513190.1-201ENST00000621254 727 ntBASIC15.68■□□□□ 0.1
SEMA3DO95025 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.68■□□□□ 0.1
SEMA3DO95025 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SEMA3DO95025 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.68■□□□□ 0.1
SEMA3DO95025 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SEMA3DO95025 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SEMA3DO95025 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.67■□□□□ 0.1
SEMA3DO95025 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.67■□□□□ 0.1
SEMA3DO95025 AC023824.1-201ENST00000562945 2975 ntBASIC15.67■□□□□ 0.1
SEMA3DO95025 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.67■□□□□ 0.1
SEMA3DO95025 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.67■□□□□ 0.1
SEMA3DO95025 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SEMA3DO95025 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.67■□□□□ 0.1
SEMA3DO95025 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.67■□□□□ 0.1
SEMA3DO95025 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
SEMA3DO95025 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.67■□□□□ 0.1
SEMA3DO95025 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.67■□□□□ 0.1
SEMA3DO95025 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.67■□□□□ 0.1
SEMA3DO95025 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SEMA3DO95025 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.67■□□□□ 0.1
SEMA3DO95025 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
SEMA3DO95025 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SEMA3DO95025 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SEMA3DO95025 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.67■□□□□ 0.1
SEMA3DO95025 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SEMA3DO95025 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.67■□□□□ 0.1
SEMA3DO95025 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SEMA3DO95025 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.67■□□□□ 0.1
SEMA3DO95025 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SEMA3DO95025 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.66■□□□□ 0.1
SEMA3DO95025 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.66■□□□□ 0.1
SEMA3DO95025 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 AC007950.2-201ENST00000615045 2347 ntBASIC15.66■□□□□ 0.1
SEMA3DO95025 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SEMA3DO95025 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.66■□□□□ 0.1
SEMA3DO95025 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.66■□□□□ 0.1
SEMA3DO95025 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.66■□□□□ 0.1
SEMA3DO95025 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.66■□□□□ 0.1
SEMA3DO95025 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.66■□□□□ 0.1
SEMA3DO95025 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.66■□□□□ 0.1
SEMA3DO95025 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.66■□□□□ 0.1
SEMA3DO95025 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.66■□□□□ 0.1
SEMA3DO95025 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SEMA3DO95025 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.66■□□□□ 0.1
SEMA3DO95025 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.66■□□□□ 0.1
SEMA3DO95025 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
SEMA3DO95025 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SEMA3DO95025 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.66■□□□□ 0.1
SEMA3DO95025 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms