Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.61■□□□□ 0.09
PDLIM1O00151 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
PDLIM1O00151 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
PDLIM1O00151 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.61■□□□□ 0.09
PDLIM1O00151 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.61■□□□□ 0.09
PDLIM1O00151 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC15.61■□□□□ 0.09
PDLIM1O00151 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.61■□□□□ 0.09
PDLIM1O00151 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
PDLIM1O00151 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 IFNL4P1-201ENST00000607083 540 ntBASIC15.61■□□□□ 0.09
PDLIM1O00151 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
PDLIM1O00151 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.61■□□□□ 0.09
PDLIM1O00151 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.61■□□□□ 0.09
PDLIM1O00151 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.61■□□□□ 0.09
PDLIM1O00151 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PDLIM1O00151 AL021920.2-201ENST00000624828 1351 ntBASIC15.61■□□□□ 0.09
PDLIM1O00151 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.61■□□□□ 0.09
PDLIM1O00151 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 AC112504.1-201ENST00000623415 1841 ntBASIC15.6■□□□□ 0.09
PDLIM1O00151 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
PDLIM1O00151 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.6■□□□□ 0.09
PDLIM1O00151 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 FAM220CP-201ENST00000395253 831 ntBASIC15.6■□□□□ 0.09
PDLIM1O00151 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.6■□□□□ 0.09
PDLIM1O00151 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.6■□□□□ 0.09
PDLIM1O00151 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.6■□□□□ 0.09
PDLIM1O00151 AL591684.3-201ENST00000605187 298 ntBASIC15.6■□□□□ 0.09
PDLIM1O00151 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.6■□□□□ 0.09
PDLIM1O00151 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.6■□□□□ 0.09
PDLIM1O00151 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PDLIM1O00151 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
PDLIM1O00151 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
PDLIM1O00151 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
PDLIM1O00151 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
PDLIM1O00151 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.59■□□□□ 0.09
PDLIM1O00151 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PDLIM1O00151 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.59■□□□□ 0.09
PDLIM1O00151 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PDLIM1O00151 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms