Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.83■□□□□ 0.28
USP29Q9HBJ7 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.83■□□□□ 0.28
USP29Q9HBJ7 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.83■□□□□ 0.28
USP29Q9HBJ7 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
USP29Q9HBJ7 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP29Q9HBJ7 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
USP29Q9HBJ7 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 AC025580.3-201ENST00000617932 1424 ntBASIC16.82■□□□□ 0.28
USP29Q9HBJ7 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 AL645939.2-201ENST00000427340 991 ntBASIC16.82■□□□□ 0.28
USP29Q9HBJ7 AC140658.5-201ENST00000438532 169 ntBASIC16.82■□□□□ 0.28
USP29Q9HBJ7 AC093724.1-201ENST00000448659 1027 ntBASIC16.82■□□□□ 0.28
USP29Q9HBJ7 CYMP-203ENST00000474680 1263 ntBASIC16.82■□□□□ 0.28
USP29Q9HBJ7 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 AP000344.2-201ENST00000512987 629 ntBASIC16.82■□□□□ 0.28
USP29Q9HBJ7 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 U82695.1-201ENST00000635752 1889 ntBASIC16.82■□□□□ 0.28
USP29Q9HBJ7 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP29Q9HBJ7 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 MIR648-201ENST00000385046 94 ntBASIC16.81■□□□□ 0.28
USP29Q9HBJ7 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP29Q9HBJ7 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP29Q9HBJ7 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms