Protein–RNA interactions for Protein: Q9BYE3

LCE3D, Late cornified envelope protein 3D, humanhuman

Predictions only

Length 92 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LCE3DQ9BYE3 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 LINC02447-202ENST00000501888 2146 ntBASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 PC-204ENST00000524491 1714 ntTSL 2 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 AL139385.1-201ENST00000611744 3272 ntBASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LCE3DQ9BYE3 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 AC138035.3-201ENST00000622706 2791 ntBASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 PPT1-215ENST00000641471 2368 ntBASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 LCK-206ENST00000373564 2137 ntTSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 ID1-201ENST00000376105 1233 ntBASIC4.42□□□□□ -1.7
LCE3DQ9BYE3 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms