Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LIMD2Q9BT23 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC9.81□□□□□ -0.84
LIMD2Q9BT23 KRT8P49-201ENST00000604166 1432 ntBASIC9.81□□□□□ -0.84
LIMD2Q9BT23 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LIMD2Q9BT23 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC9.81□□□□□ -0.84
LIMD2Q9BT23 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC9.81□□□□□ -0.84
LIMD2Q9BT23 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.84
LIMD2Q9BT23 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC9.81□□□□□ -0.84
LIMD2Q9BT23 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.84
LIMD2Q9BT23 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LIMD2Q9BT23 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 AC243591.1-201ENST00000452967 1364 ntBASIC9.8□□□□□ -0.84
LIMD2Q9BT23 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 AP002414.1-201ENST00000391405 1147 ntBASIC9.8□□□□□ -0.84
LIMD2Q9BT23 TSPY19P-201ENST00000418461 509 ntBASIC9.8□□□□□ -0.84
LIMD2Q9BT23 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 TSPY18P-201ENST00000441642 509 ntBASIC9.8□□□□□ -0.84
LIMD2Q9BT23 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 HLA-J-202ENST00000469281 1241 ntBASIC9.8□□□□□ -0.84
LIMD2Q9BT23 SDHD-206ENST00000528182 754 ntTSL 3 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 RNF151-202ENST00000569210 853 ntTSL 2 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 NKAPP1-205ENST00000585790 367 ntBASIC9.8□□□□□ -0.84
LIMD2Q9BT23 MTDHP4-201ENST00000600287 670 ntBASIC9.8□□□□□ -0.84
LIMD2Q9BT23 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 GGTLC5P-201ENST00000617623 998 ntBASIC9.8□□□□□ -0.84
LIMD2Q9BT23 REXO1L6P-202ENST00000619970 1078 ntBASIC9.8□□□□□ -0.84
LIMD2Q9BT23 PGM5P2-202ENST00000637225 1043 ntBASIC9.8□□□□□ -0.84
LIMD2Q9BT23 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LIMD2Q9BT23 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC9.79□□□□□ -0.84
LIMD2Q9BT23 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms