Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.51■□□□□ 0.23
CHFRQ96EP1 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHFRQ96EP1 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.51■□□□□ 0.23
CHFRQ96EP1 MIR8072-201ENST00000614241 80 ntBASIC16.51■□□□□ 0.23
CHFRQ96EP1 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CHFRQ96EP1 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.51■□□□□ 0.23
CHFRQ96EP1 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.51■□□□□ 0.23
CHFRQ96EP1 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHFRQ96EP1 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHFRQ96EP1 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHFRQ96EP1 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CHFRQ96EP1 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.51■□□□□ 0.23
CHFRQ96EP1 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.51■□□□□ 0.23
CHFRQ96EP1 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHFRQ96EP1 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHFRQ96EP1 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHFRQ96EP1 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHFRQ96EP1 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 AC105020.1-201ENST00000435356 2205 ntBASIC16.5■□□□□ 0.23
CHFRQ96EP1 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 AC119751.2-201ENST00000504529 210 ntBASIC16.5■□□□□ 0.23
CHFRQ96EP1 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 KRT17P8-201ENST00000540749 863 ntBASIC16.5■□□□□ 0.23
CHFRQ96EP1 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 MIR4321-201ENST00000592276 80 ntBASIC16.5■□□□□ 0.23
CHFRQ96EP1 RPSAP52-203ENST00000622976 1023 ntBASIC16.5■□□□□ 0.23
CHFRQ96EP1 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 AP001094.4-201ENST00000579008 2176 ntBASIC16.5■□□□□ 0.23
CHFRQ96EP1 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHFRQ96EP1 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.5■□□□□ 0.23
CHFRQ96EP1 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.5■□□□□ 0.23
CHFRQ96EP1 AC078925.2-201ENST00000624013 1973 ntBASIC16.49■□□□□ 0.23
CHFRQ96EP1 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 MIR4259-201ENST00000584466 101 ntBASIC16.49■□□□□ 0.23
CHFRQ96EP1 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 AL391069.4-201ENST00000609583 481 ntBASIC16.49■□□□□ 0.23
CHFRQ96EP1 WFDC1-204ENST00000613603 549 ntBASIC16.49■□□□□ 0.23
CHFRQ96EP1 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CHFRQ96EP1 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHFRQ96EP1 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms