Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 AC027307.2-201ENST00000591252 911 ntBASIC19.71■□□□□ 0.75
VPS53Q5VIR6 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 LINC01144-201ENST00000626198 1710 ntBASIC19.71■□□□□ 0.75
VPS53Q5VIR6 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 FAM58DP-201ENST00000428076 619 ntBASIC19.7■□□□□ 0.74
VPS53Q5VIR6 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 AC005622.1-201ENST00000636801 1703 ntBASIC19.7■□□□□ 0.74
VPS53Q5VIR6 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS53Q5VIR6 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 AC022188.1-201ENST00000620960 1664 ntBASIC19.69■□□□□ 0.74
VPS53Q5VIR6 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 AC093724.1-201ENST00000448659 1027 ntBASIC19.69■□□□□ 0.74
VPS53Q5VIR6 RN7SL589P-201ENST00000481268 310 ntBASIC19.69■□□□□ 0.74
VPS53Q5VIR6 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 AC027612.4-201ENST00000605371 583 ntBASIC19.69■□□□□ 0.74
VPS53Q5VIR6 AL596087.1-201ENST00000400979 1969 ntBASIC19.69■□□□□ 0.74
VPS53Q5VIR6 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS53Q5VIR6 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 AL592309.1-201ENST00000443127 649 ntBASIC19.68■□□□□ 0.74
VPS53Q5VIR6 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 PRYP6-201ENST00000514804 343 ntBASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms