Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 CENPM-205ENST00000404067 905 ntTSL 3 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 SPDYE12P-201ENST00000618416 771 ntBASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 AC100757.3-201ENST00000622361 1406 ntBASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4AQ9BY43 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 AC092364.2-202ENST00000597012 1073 ntBASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC20.74■□□□□ 0.91
CHMP4AQ9BY43 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 INO80C-206ENST00000586489 594 ntTSL 3 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 TEX28P1-201ENST00000613479 1221 ntBASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 TEX28P2-201ENST00000617764 1221 ntBASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 AL390754.1-201ENST00000619088 582 ntBASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 MIR6069-201ENST00000620069 79 ntBASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms