Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
MSH3P20585 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.3■□□□□ 0.2
MSH3P20585 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.29■□□□□ 0.2
MSH3P20585 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
MSH3P20585 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 ME2P1-201ENST00000426028 1970 ntBASIC16.29■□□□□ 0.2
MSH3P20585 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.29■□□□□ 0.2
MSH3P20585 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
MSH3P20585 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
MSH3P20585 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
MSH3P20585 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.29■□□□□ 0.2
MSH3P20585 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.29■□□□□ 0.2
MSH3P20585 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
MSH3P20585 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.29■□□□□ 0.2
MSH3P20585 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.29■□□□□ 0.2
MSH3P20585 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
MSH3P20585 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
MSH3P20585 AL592309.1-201ENST00000443127 649 ntBASIC16.29■□□□□ 0.2
MSH3P20585 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.29■□□□□ 0.2
MSH3P20585 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
MSH3P20585 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.29■□□□□ 0.2
MSH3P20585 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.29■□□□□ 0.2
MSH3P20585 AC027307.2-201ENST00000591252 911 ntBASIC16.29■□□□□ 0.2
MSH3P20585 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.29■□□□□ 0.2
MSH3P20585 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.29■□□□□ 0.2
MSH3P20585 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
MSH3P20585 AC079781.4-201ENST00000641908 219 ntBASIC16.29■□□□□ 0.2
MSH3P20585 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.29■□□□□ 0.2
MSH3P20585 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.29■□□□□ 0.2
MSH3P20585 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.29■□□□□ 0.2
MSH3P20585 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSH3P20585 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 AC073439.1-201ENST00000624121 1774 ntBASIC16.28■□□□□ 0.2
MSH3P20585 AC005052.1-201ENST00000625181 2492 ntBASIC16.28■□□□□ 0.2
MSH3P20585 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
MSH3P20585 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.28■□□□□ 0.2
MSH3P20585 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
MSH3P20585 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
MSH3P20585 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.28■□□□□ 0.2
MSH3P20585 AP000344.2-201ENST00000512987 629 ntBASIC16.28■□□□□ 0.2
MSH3P20585 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.28■□□□□ 0.2
MSH3P20585 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.28■□□□□ 0.2
MSH3P20585 SNHG9-202ENST00000564014 471 ntBASIC16.28■□□□□ 0.2
MSH3P20585 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.28■□□□□ 0.2
MSH3P20585 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 AL691403.2-201ENST00000618460 490 ntBASIC16.28■□□□□ 0.2
MSH3P20585 AC008267.7-201ENST00000624570 1194 ntBASIC16.28■□□□□ 0.2
MSH3P20585 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.28■□□□□ 0.2
MSH3P20585 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSH3P20585 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.28■□□□□ 0.2
MSH3P20585 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 FLJ16779-201ENST00000612722 7638 ntBASIC16.28■□□□□ 0.2
MSH3P20585 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.28■□□□□ 0.2
MSH3P20585 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms