Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 AC087481.3-201ENST00000602886 1894 ntBASIC12.36□□□□□ -0.43
HLA-DQA1P01909 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
HLA-DQA1P01909 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 CNTNAP3P2-201ENST00000617175 3861 ntBASIC12.35□□□□□ -0.43
HLA-DQA1P01909 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 Telomerase-vert.1-201ENST00000363312 438 ntBASIC12.35□□□□□ -0.43
HLA-DQA1P01909 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 RPS20-210ENST00000523936 899 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 AC145285.6-201ENST00000604632 637 ntBASIC12.35□□□□□ -0.43
HLA-DQA1P01909 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 C8orf49-201ENST00000525043 1968 ntBASIC12.35□□□□□ -0.43
HLA-DQA1P01909 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 AL390755.1-201ENST00000623716 2027 ntBASIC12.35□□□□□ -0.43
HLA-DQA1P01909 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DQA1P01909 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 AC006277.1-201ENST00000624348 1610 ntBASIC12.34□□□□□ -0.43
HLA-DQA1P01909 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 AP000523.1-201ENST00000398242 1049 ntBASIC12.34□□□□□ -0.43
HLA-DQA1P01909 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 MTCL1P1-201ENST00000446207 792 ntBASIC12.34□□□□□ -0.43
HLA-DQA1P01909 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms